Panicum virgatum (switchgrass): 120690559
Help
Entry
120690559 CDS
T07260
Name
(RefSeq) bromodomain and WD repeat-containing protein 1-like isoform X1
KO
K11797
PH-interacting protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120690559
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120690559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Bromodomain
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
Beta-prop_EIPR1
Auxin_resp
VPS8_N
Beta-prop_HPS5
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
120690559
NCBI-ProteinID:
XP_039829179
LinkDB
All DBs
Position
9N:67010705..67036218
Genome browser
AA seq
1683 aa
AA seq
DB search
MSFRKHQVSSNAASISLAPLDFPSHELEKVNPLNSVMSADVAAMDGVDIDMREVYFLIMH
FLSHGPFKRTFGELCNELLEHQLLPRRYHAWYSRGGFHSGEENDDGISLPLGYAKLAERY
PHIGKNHLVKLLKQLMVSSCHPHNLIGAVSPNAADVPTLLGSNSFSLLASDRQDKETPKM
PSYLRWPHIQADQVHGLGLREIGGFTKHCRAPSVRASCYAIAKPSTLVEKMQIIKRLRGH
QNAVYCATFDRTGRYVITGSDDRLVKIWAMETAFCLASCRGHEGDITDLAVSSNNAVVAS
SSNDFIIRVWRMPDGMPVSVLKGHTGAVTAIAFSPRPGAAFQLLSSSDDGTCRIWDARYS
QQPPRIYTPKPPDVAPGKSVDASSSAVQVQPTNHQILCCAFNANGTVFVTGSSDTFARVW
NACKSSSEEHNQPNHEMDLLSGHENDVNYVQFSGCAVASRSFSSDSSHISKEENNLKFRN
SWFTHNIVTCSRDGSAIIWVPRSRRSHGRVGRWTRAYHLKVPPPPMAPQPPRGGPRQRYQ
PTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLIGHKESTFVLDVHPFNPRI
AMSAGYDGKTIIWDIWEGKPVQIYETGHFKLVDGKFSPDGTSLILSDEIGQIFIIGTGQG
ESQKDAKYDQFFLGDYRPLIRDTNGGVIDQETQLIPHRRNMQDFLCDAGMMPYPEPFQSM
YQKRRLGTLGIEWRPPSVNFAVGPTYNATTGEYQTIPIIDPDRWEPLPEITDFIELEPEN
EVISDDTDSEYNGMDENSSEGEQEIMSGDSSGTSYSSAEIDADNPSSAAHLRRSRRKKKK
SEVVQAELVTSSGRRVRKKILDEPDTATVSRPHRSTKSRNGRSSKRKRSPKSRELRPQRR
AARNALNFFSKIGASTEEDEDDSEGSFSDSELNTDSTDAEQLEHAGQLRFSTEEDVTQPS
QFTDNKGNSGTGRKLVLRIPRRGLKIPFPSGSGKAECSTQDSLALANHESVEPELTVEHR
HSSACKAELLADGGLYDGSAVHSNNSIRWGEVKMRSSKRFKVSDRAGGLWSTPNNAASQD
IEGSGSQEMPHEYGGGIQQSVGQNVQEIRPETILDNIQENHTTDEYNGENFGDKEKITNN
NNAWADGANNTIQVNNTSQPSLKLKLKPRCFADGASVPDKSRSAAEGNIMNAEHGEGSVR
HDDDSSINQPRNVDILNASKSSQECTDKSIDLHDSKKLLLDSPKTFTAVYKRSKTNNRKK
MDSDEYANEDSTSISNDDGGYQPPEYSHVTAASSRLRRSTRKSYAHYGDGTLRDDISQVK
DSYSSYEASTSGRRIVTDVREVMWPTSKTVGLRSARNKRESSNFPDTHLFGKKHQGPLKY
SWLMLHEHEDSYRYIPQLGDEIMYLWQGHKEYLEGERSSDPCPWKRIKGLKAVELCKIQG
LDYSSYKGSGESCCKLSIEFIDRASTGFGKTFMVTLPELVSYPDFLVEKTRYEAAMERNW
THRDKCKVWWRDEEERGGNWWEGRVVAVKPKSTDFPDSPWEKYVVQYKKDSSEHPHSPWE
LHDVGNLWVPWKHPHINLEIRDKLLSEMEDLQEMSHGNQDRYGVLKLDKVTEKLDFVNRF
PVQFSTEVIKTRLANNYYRTLEAVRHDATVMLVNAESYFSKSAEMTKKIRRLSDWVDQTF
SSL
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttagaaagcaccaagtttccagtaatgcagcctccataagtttggctcctctg
gattttccaagtcatgaacttgagaaggttaatcctttgaattcagtgatgtcagctgat
gttgcagccatggatggtgtggatattgatatgagagaagtttactttctcattatgcat
tttttatctcatggtccatttaaacggacctttggtgaactgtgcaatgaactactggag
catcaactgctgcctagaagataccatgcttggtattcgcgtggtggttttcatagtggt
gaagaaaatgatgatggcatatcactccctttgggttatgcaaagttagctgagagatac
ccccacattggtaaaaaccacttggtaaagctattaaagcaactgatggttagttcctgt
cacccacacaacttgattggggcagtttctccaaatgctgctgatgttccaacacttctt
ggctccaactccttttctcttcttgcatctgacaggcaagataaggaaactcccaagatg
ccaagctatcttcgttggccgcacatacaggctgatcaagttcatggtctaggtttaaga
gagattggtggttttactaaacactgtcgggctccctctgtacgtgcatcgtgctatgct
atcgcaaagccatctacccttgttgaaaagatgcaaatcataaaacgattgaggggacat
caaaatgctgtgtattgtgctacctttgatcgcacggggcgttatgttattactggttct
gatgaccgccttgttaaaatatgggcgatggaaacagctttttgtctggctagctgcagg
ggccatgaaggtgatattactgatcttgctgtcagttccaataatgctgtggtggcatct
tcatccaatgatttcattattagagtgtggcgtatgcctgatggaatgccagtctcagtg
ctgaaggggcacacaggagcagttactgctattgcatttagtccaaggccaggtgctgct
ttccagctgttgtcgtcatcagatgatgggacatgcaggatttgggatgccagatactcc
caacaacctccacgaatatatacaccaaagcccccagatgttgcccctgggaagagcgtt
gatgcatcttcaagcgctgttcaagtccagccaacaaatcaccaaatcctatgttgtgcg
ttcaatgctaatggaactgtgtttgtcactggcagctcagacacctttgctagggtatgg
aatgcttgcaagagttcttctgaggaacacaaccaaccaaatcatgagatggatctatta
tctgggcatgaaaacgatgtaaactatgtgcagtttagtggatgtgcagtggcatcaaga
tcattttcatctgattccagtcatatctctaaggaagaaaataatctgaagttcagaaat
tcctggttcacgcataatattgttacctgctcacgtgatggcagtgcaattatatgggtt
ccacgatctcggaggtcacatggaagggttggacgctggacacgtgcttaccatcttaaa
gtccccccacctccaatggctcctcaaccacctcgaggtggtcctcgtcaaagataccaa
ccaactcctcgtggtgtcaacatgattgtttggagtctggacaaccgctttgtacttgct
gctatcatggattgcagaatttgtgtatggaatgcttctgatgggagcttggtgcattca
ctgatcggccataaggaatccacatttgttcttgatgtgcatccattcaaccctcgtatt
gctatgagtgctgggtatgatggaaagacgatcatctgggatatatgggaaggaaaaccc
gtgcaaatttatgaaacagggcattttaaactagttgatgggaagttctctccggatggc
acgtcacttattttatcggacgaaattgggcaaatattcatcattggtactgggcaagga
gagtcccagaaggacgcaaaatatgatcagttcttccttggagactatcgacccctcatt
cgagataccaatggaggcgttattgatcaggaaacacagcttataccacataggaggaat
atgcaagacttcttatgtgatgctggtatgatgccatatccagagcccttccagagtatg
taccagaaacgtcggttaggtacacttggtattgagtggcgacctccctctgtgaacttt
gctgttggccccacgtacaatgcgaccactggtgaatatcaaaccatcccaattattgat
cccgataggtgggaaccacttccagagataacagacttcattgagcttgaaccagaaaat
gaagttatctctgacgatactgattctgagtacaatggcatggatgagaattcaagtgaa
ggagaacaggaaattatgagtggtgattcctcgggtacttcatattcaagtgcagaaatt
gatgcagataaccctagtagtgctgctcatctccgccggtcaagaagaaagaagaaaaaa
tctgaggttgtgcaggctgaacttgttacttcatctggtcggcgagttaggaaaaagatt
ttggatgagcctgatacagctacagtgtcaaggccacatagaagtacgaagtctaggaat
ggacgttcaagcaaaaggaaaaggtccccaaaatccagggaattgcgtcctcaaagacgt
gctgctcgaaatgcactcaattttttctcaaagataggagcttcaacggaagaggatgaa
gatgactcagagggaagtttctcagacagtgaattgaacacagatagtactgatgctgaa
cagttagaacacgctggccaactaagatttagtacagaggaagatgttacacaaccttct
caatttacggataataagggaaattctggaactggtagaaaattagtcctcagaatacca
cgccgtggtttgaagattccatttccttcaggaagtggaaaagcagaatgctccacacag
gattctcttgctctagctaatcatgaatcagtagagcctgaactaactgttgaacacaga
cattcctctgcttgcaaggctgaattactagcagatggtggtctgtatgatggttctgct
gttcacagtaacaactcaattaggtggggtgaagttaagatgcgatcctcaaagcgtttc
aaggtcagtgatcgagcgggagggttgtggtccactccaaataatgcagcttcacaggat
attgaaggatcaggtagtcaggagatgcctcatgaatatggtggtggaatccagcaaagt
gttgggcaaaatgtacaagaaatacgacctgaaacaattctagataacattcaggaaaac
cacactactgatgagtataatggagaaaattttggggacaaagaaaagataactaacaat
aataatgcctgggcagatggagcaaataataccatacaagttaacaatacttctcagcct
tccttgaaactgaagttgaaaccaagatgttttgcagatggagcaagtgtgcctgacaaa
tcaagaagtgcagcagagggaaatatcatgaacgccgagcatggtgaaggttcagtacgg
catgatgatgattcttcgataaatcaacctaggaatgtggacatactcaatgcgtccaaa
agttctcaggaatgcacagataaaagcattgatttacatgattcgaaaaagctgctcttg
gattctccaaagacgtttactgcagtgtacaaaaggtcaaagacaaataacaggaaaaaa
atggattcagatgaatatgcaaacgaggatagtacttctatctcaaatgacgatggtgga
taccaacctccagaatatagtcatgttacagctgcaagcagtagattgcgaagaagcaca
aggaagtcatatgcgcactatggtgatggcacactacgggatgatatttctcaagtgaaa
gattcttatagttcctatgaagcttcaactagtggaagacgaattgtcacagatgtgcgg
gaagtaatgtggccaacctcaaaaacggttggtttaaggtctgccaggaacaaaagagag
agtagcaactttcctgatacacatctatttggtaaaaagcaccaggggcccttaaagtat
tcatggttaatgttgcacgagcatgaagatagttaccgttatattcctcaactgggtgat
gagattatgtacttgtggcagggccacaaggaatatcttgaaggagagcgatcatctgat
ccttgcccttggaagcggataaaaggccttaaagctgtagaactttgcaaaatacagggt
cttgattactcctcttacaaaggatctggtgaaagctgctgtaaactatccattgaattc
attgatcgcgcttccactgggtttggcaaaacatttatggtcaccttgcctgagctagtt
agctatccagattttcttgtggaaaaaacaaggtatgaagctgctatggagcggaattgg
acccacagagataagtgcaaagtttggtggagggatgaagaagaacggggaggaaattgg
tgggagggacgggttgtggcagtaaaacctaaatcaactgatttcccagatagcccatgg
gagaaatatgtcgtacagtataagaaggatagttctgagcacccacatagcccctgggaa
cttcatgatgtaggcaatttatgggttccatggaaacatccgcatattaatcttgagatt
cgagataaattgttatcagaaatggaagatttacaagaaatgtcgcacgggaatcaggat
cgttatggtgttctaaagttagacaaggtcactgaaaagttggactttgtgaacaggttt
cctgtccaattttccacagaggtgatcaagacaagattagcgaacaattactacagaact
ctggaggctgtccgacatgacgccactgtgatgcttgtaaatgcagagtcctacttttca
aagagtgctgaaatgaccaaaaagatccgcaggctctctgactgggtcgatcaaaccttt
tcatcattgtag
DBGET
integrated database retrieval system
