Panicum virgatum (switchgrass): 120690560
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Entry
120690560 CDS
T07260
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00040
Pentose and glucuronate interconversions
pvir01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
120690560
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
120690560
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
120690560
NCBI-ProteinID:
XP_039829214
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Position
1K:complement(9916597..9918628)
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AA seq
445 aa
AA seq
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MMERLRWSRPGSLLVVAAAFLASAAMSSAGIADLDEHWQKRKELAEAAAREAYRPDPYNV
TNSFNIAVHRATSLRREMGEKKNKKKKNKSGGPCKATNPIDKCWRCRKDWATDRQRMARC
ARGFGHLATGGLGGKIYVVTDPGDADALNPRPGTLRWGAIQTGPLWITFARSMIIELSQE
LLVSSDKTIDGRGAQVRIANGGGITVQFARNVIIHNLHVHDVKHTMGGMMRDSPTHTGPR
TKADGDGISLFGATNVWIDHISMSNCEDGLVDVVQSSTGVTISNCHFTNHNDVMLFGASD
SYPQDQVMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSNAPTIISQG
NRYIAPPNMAAKVITKHYADEGVWKNWVWHTENDLFMNGAVFQPSGGAVPRKVKKDEWVK
PKPGSYVTRLTRNSGTLECRPGMPC
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaggctccggtggagccgccccggctccctcctcgtggtcgcggcggcgttc
ctggcgtccgctgcaatgtcgagcgccggcatcgccgacctcgacgagcactggcagaag
cgcaaggagctggccgaggcggcggcgagggaggcgtacaggcccgacccctacaacgtg
accaacagcttcaacatcgccgtacaccgggccaccagcctgcggcgcgagatgggggag
aagaagaacaagaagaagaagaacaagtccggcgggccctgcaaggcgacgaacccgatc
gacaagtgctggcgctgccgcaaggactgggcgacggaccggcagcgcatggcccgctgc
gcccgcggcttcgggcacctggccaccggcggcctcggcggcaagatctacgtcgtcacc
gaccccggcgacgccgacgccctcaacccgcgtcccggcacgctccggtggggcgccatc
cagacgggcccgctgtggatcaccttcgcccggtccatgatcatcgagctctcgcaggag
ctcctggtgagcagcgacaagaccatcgacgggcgcggcgcgcaggtgcgcatcgccaac
ggcggcggcatcaccgtgcagttcgcccggaacgtgatcatccacaacctgcacgtgcac
gacgtgaagcacaccatggggggcatgatgcgggactcgccgacgcacacgggcccgcgc
accaaggccgacggcgacggcatctcgctgttcggcgccaccaacgtgtggatcgaccac
atctccatgtccaactgcgaggacgggctggtggacgtggtgcagagctccacgggggtc
accatctccaactgccacttcaccaaccacaacgacgtgatgctgttcggggccagcgac
tcgtacccgcaggaccaggtgatgcagatcaccgtcgccttcaaccacttcgggaggggg
ctcgtgcagcggatgccgcgatgccgctggggcttcttccacgtcgtcaacaacgactac
acgcactggctcatgtacgccatcggcggcagcaacgcgcccaccatcatcagccagggc
aaccgctacattgcgccgccaaacatggcagccaaagtgatcaccaagcactacgccgac
gagggcgtgtggaagaactgggtgtggcacacggagaacgacctcttcatgaacggcgcc
gtcttccagccctccggcggcgccgtcccgaggaaggtgaagaaggacgagtgggtcaag
cccaagccaggctcctacgtcaccaggctcacccgcaactccggcaccttggagtgcagg
cccggcatgccgtgctga
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