Panicum virgatum (switchgrass): 120690587
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Entry
120690587 CDS
T07260
Name
(RefSeq) protein OPAQUE1-like isoform X1
KO
K10357
myosin V
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
120690587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120690587
04131 Membrane trafficking [BR:
pvir04131
]
120690587
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120690587
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pvir04812
]
120690587
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
120690587
mRNA cycle factors
P-body specific factors
120690587
Membrane trafficking [BR:
pvir04131
]
Others
Actin-binding proteins
Myosins
120690587
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
120690587
Cytoskeleton proteins [BR:
pvir04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
120690587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
AAA_16
CCDC22_CC
Zeta_toxin
TSC22
Mis12
AAA_22
AAA_lid_6
ABC_tran
Motif
Other DBs
NCBI-GeneID:
120690587
NCBI-ProteinID:
XP_039829223
LinkDB
All DBs
Position
9N:complement(32502276..32550135)
Genome browser
AA seq
1508 aa
AA seq
DB search
MMFRPGTAVWVEHADLTWAEAEVVSSPASSSSKSAVTVVLSTGVKAVVDGRKVLPRDTEA
DLGGVDDMTKLVYLHEPGVLCNLARRYTLNEIYTYTGRILIAVNPFAKLSHMYNMHMMEQ
YRGVQFGELSPHVFAIADASYKAMVSENRSQSILVSGESGAGKTETTKLIMRYLTFVGGR
ATGDVRSVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDKSGRISGAAVRTYLL
ERSRVVQISESERNYHCFYQLCASGQDADKYKLSHPRNFNYLNQSHMYELEGVNEAEQYL
QTRRAMDIVGICFSDQEAIFRTVAAILHLGNIEFSPGEEFDSSVIKDENCKFHLQMAADL
LMVDASLLLSTLCYRTIKTPEGNIVKAVDCSAAVIGRDTLAKTVYARLFDWLVDNINKSI
GQDVESRSQIGVLDIYGFECFKYNSFEQLCINFANEKLQQHFNKHVFKMEQEEYKTEEIN
WSYIEFVDNQDILDLIEKKPIGIVSLLDEACMLGKSTHETFAMKLFQNLRAHPRLEKPKL
SKTDFALFHFAGKVTYQTDLFLEKNRDYVIAEHQNLLSSSKCSFISGLFASHQDDPSKSS
YKFSSVASRFKQQLQALMETLSSTEPHYIRCIKPNSLSRPQKFENGSVLQQLRSGGVLEA
IRISLAGYPTRRTYSEFINRFGLLVPEHMDERFDERSLTQRILKQLNLENFQLGRTKVFL
RAGQIAVLDSRRGEILDNASRILQGHFRTFIARKKFLSTRKASISIQMYCRGCLARNVLE
AKKQIAAAVSVERYARRWLCRCAYLHLRSAALVIQSGIRYILAVQRLRHVKNAKASTVIQ
AWWRMQKLHNFHQQYRWATVLIQCCWRQKLAKRALRNLKHAAYEAGALREAKGKLEKSLE
DLTLRFTLERRQRLAAEESKALEISKLVKILESVKSELEASNEENKRNCKKIASLQHQLE
LSSKDQEALNNSLSQMEEVKRENISLKESNAEMEQELLKAQKCSHDNMDKLHDVEKNYLH
LRDNLKNLEDKISNLEDENHLLRQKALNLSPRHSRSGSHQIGASPCSPRSFYESSPVKLA
PLPHNTTELRRSRMNSDRHEDYHDVLQRCIKDDMGFKKGKPVAACIIYKCLLHWGVFEAE
RTTIFDFIIHTINNILKTENENDILPYWLANASALLCMLQRNLRSKGFIMAPSRSSSDTH
LSEKANDTFRYPLKAFGQRTSMSHIDARYPAMLFKQQLTASLEKIFGLIRDNLKKEISPL
LSLCIQAPKLARGSGGRRSGSPDVAVQQPISTHWDRIVKFLDSLMDRLHKNFVPSFFVRK
LVTQVFSFINVQLFNSMLLRRECCTFSNGEYVKSGLCVLEKWIVEAEEEHTGTSWDELKF
IRQAVDFLVIPHKSKKTLEQIKRNICPALSVRQIYRICTMYWDDKYGTHSVSAEVVAKMR
DMVSNDTQNPVSNSFLLDDDLSIPFTTEEIAEEVPDVDMSNIEMPSSLRHVHSAQFLMQH
LQSSCLSR
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgatgttccgcccgggcaccgccgtgtgggtggagcacgcggacctcacctgggccgag
gccgaggtggtatcctcccccgcctcctcgtcatcgaagtccgcggtcacggtcgttcta
tccaccggcgtcaaggccgtggtggacggtaggaaggtcctgccgcgggacacagaggct
gatctcgggggcgtcgacgacatgaccaagctcgtctacctccatgaacccggggtgctc
tgcaacctcgcgcggcgatacacacttaacgagatctacacatacacagggcgcatctta
atcgctgtaaatcctttcgcaaagctgtctcatatgtacaatatgcatatgatggagcag
tacagaggcgtgcagttcggtgaattgagtccacatgtttttgccattgcagatgcatca
tacaaagctatggttagcgagaaccgcagccagtccatattagtcagtggagaaagtggt
gctgggaaaacggaaactaccaagctcattatgcgatatcttacttttgttgggggccgt
gcaactggtgatgtccgctctgtggagcaacaagttctagagtcaaatccactgttggag
gcttttggtaatgcacggactgtgagaaatgacaactccagtcgatttgggaaatttgtt
gaaattcagtttgacaaatctggtagaatatctggcgctgcggttcgaacttatctcctg
gaacgatctcgtgttgtgcaaatttctgaatctgaaaggaattaccactgtttttatcaa
ctttgtgcatctgggcaggatgcagataaatacaagctttctcaccctaggaactttaac
tacttgaatcaaagccatatgtatgaattagaaggggtcaatgaggcagagcaatattta
caaacacggagagcaatggacattgttggtatatgtttttctgatcaggaagctatattc
cgtacggtggctgctatccttcatctagggaatattgaattttctcctggagaagagttt
gattcatctgttattaaggatgaaaattgcaaattccatctacagatggctgctgatttg
cttatggttgatgcaagccttttgctttcaactctttgctatcgcacaattaaaactccc
gaaggaaacatagtcaaggcagttgactgttctgcagctgtcattggtcgtgatacactt
gcaaagactgtttatgctcgactatttgattggcttgttgacaacattaataagtccatt
gggcaggacgtggagtcaaggtcacaaattggggtcttggacatatatggttttgagtgt
ttcaaatataacagctttgagcagttgtgcatcaattttgctaatgaaaagctccaacaa
cattttaataagcatgttttcaagatggagcaggaggaatataaaacagaagaaatcaat
tggagctacattgaatttgttgataaccaagatatattggatcttattgaaaagaaacca
ataggcatagtttcactattggatgaagcatgcatgcttgggaagtcaacacatgaaact
tttgcaatgaagttgtttcagaatttaagggcacatccaagactagaaaaaccaaagctt
tctaagacagattttgccctatttcattttgctggaaaggtgacctaccaaactgatttg
tttttagagaagaaccgagattatgttatagcagagcaccagaatcttttgtcttcttca
aaatgctcatttatttctggtctcttcgcttcacaccaagatgacccctcaaaatcatcc
tataagttttcttcagtagcttcacgatttaagcaacaactccaagcactaatggagaca
cttagctcaacggaacctcactacatccgttgcataaaaccaaattctctgagtcgtcca
cagaagtttgaaaatggcagtgttctacagcaactgcgtagcgggggtgtccttgaagct
attaggataagtcttgctggttatcccacacggagaacatactccgagttcattaatcgc
tttggacttcttgtgccagagcatatggatgaaagatttgatgagagatcactgacacag
aggatcctaaagcaactaaaccttgagaactttcaacttggcaggacaaaagtttttctc
cgggctggccagattgctgttttggactccagacgtggtgagattctggacaatgcttcc
agaatattgcagggtcactttcgaacctttattgctcgcaagaaatttctttcaacaagg
aaagcttccatctccatccaaatgtattgccgagggtgtttagcacgaaatgtgcttgaa
gctaagaaacagatagcagcagctgtttcagttgaaagatatgctcgaagatggttgtgt
cgttgtgcatatttgcatcttcgttctgctgctcttgtgatccagtctggtattcgctat
atcttagcagttcaaagattgcggcacgtaaagaatgctaaagcttctactgttatacag
gcttggtggaggatgcagaagctccataatttccatcagcaataccgatgggcaacagtt
ctcatccagtgctgttggagacagaagcttgctaaaagggcattgcggaaccttaaacat
gctgcatatgaagctggagccttacgagaagcaaaaggaaaactcgagaagagcttagaa
gatcttaccttacgattcaccttagagaggaggcaaaggcttgctgctgaagagtcgaag
gcattggagatatctaagcttgtcaaaatcttggagtctgtgaagtcagaattagaggca
tcaaatgaagaaaataaaaggaattgcaagaaaattgcctcgctccaacatcagttagag
ttatcatccaaggatcaagaagctctgaataacagtctttctcaaatggaagaagtgaag
agggagaatatttcactaaaggaaagtaatgcagaaatggaacaagagctattaaaagct
caaaaatgtagccatgataatatggataagctgcacgatgtggaaaagaactatttgcat
ctccgggataacttgaaaaacttagaggataagatctcgaatttagaagatgagaatcat
ttattgaggcagaaggccttgaacttatctcctaggcacagccgaagtgggagccatcag
atcggggcttcaccatgcagcccaaggtcattctatgaatcttcacctgtaaaactcgca
cctctcccacataacactacagaactaagaaggtcaaggatgaattctgatagacatgag
gattatcatgatgtgctccaacgatgcatcaaagatgatatgggattcaagaagggaaaa
ccagttgcagcctgtatcatttacaaatgccttctccattggggagtatttgaggctgaa
agaacaactatttttgacttcataattcacacaattaataacatcctgaagacagaaaat
gagaacgacattttgccctattggctagccaatgcttctgcccttctatgcatgttacaa
agaaatttaaggtcaaaaggattcataatggcaccctctcgatcgtcttcagatactcac
ttaagtgaaaaggcaaatgacacattccggtatcctttgaaagcctttggccagcggaca
agcatgtcacacattgatgctcgatacccggccatgctatttaagcaacaacttactgcc
tccttggagaagatctttggattaattcgtgacaacctaaagaaagagatatcccctctt
ttgagcctttgcattcaggcaccaaaacttgctcgaggaagtggtggaaggaggtctgga
tcacctgacgtggccgtgcagcaaccaataagtactcattgggatcggattgttaaattt
ttggactcactgatggatagactacataaaaattttgtgccttcttttttcgtccgcaag
ctagtaactcaagttttttccttcattaatgtacagttgttcaatagtatgcttctacga
cgagaatgttgcacattttcaaatggagaatatgtgaagtctgggctttgtgtacttgag
aaatggattgtggaggctgaagaagagcatacaggtacatcttgggatgagctgaagttc
atcaggcaagcggttgactttctggtcattccacataaaagcaaaaagacccttgagcag
attaagaggaatatttgcccggcgttaagtgtgagacagatatatcgtatatgtacgatg
tactgggatgacaaatatggtacccatagtgtatcagctgaggttgttgccaaaatgagg
gacatggtgagcaatgacacacaaaatcctgtgtccaattcatttcttctagatgatgac
ttaagcattccattcacaaccgaggaaatagcagaggaagtaccagacgttgacatgtca
aacattgaaatgccctcatcgcttcgtcatgttcactctgctcagttcttgatgcagcac
cttcagtcgtcttgcctgtcgcgatga
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integrated database retrieval system
