Panicum virgatum (switchgrass): 120690613
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Entry
120690613 CDS
T07260
Name
(RefSeq) heat stress transcription factor A-2d-like isoform X1
KO
K09419
heat shock transcription factor, other eukaryote
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120690613
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Heat shock factors
120690613
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GFIT
Motif
Pfam:
HSF_DNA-bind
FUSC
Flu_PB2_3rd
Motif
Other DBs
NCBI-GeneID:
120690613
NCBI-ProteinID:
XP_039829260
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Position
9N:complement(78299933..78302357)
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AA seq
335 aa
AA seq
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MDPLLPGVVTVKEEWPPSSPPPEEEVEDMDAAPAGAPRPMEGLHEVGPPPFLTKTFDLVA
DPATDQVVSWGRTGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWE
FANEGFLRGQRQLLRLIKRRRPPSYLPGPQQQALGSCLEVGQFGGGLDEEMDRLRRDKNI
LLAEVGKLRQEQQSTRADMRAMEERLQHAEQKQVQMMGFLARALQNPDFFQQLAQQQERR
RELEDAFSSRKRRRPPIDAAPFEEASGRPRDDEPPLLFRGCGGFEAGTSELENLALNIQG
LGKRRQDEKQAPGGGGGETAELTDEFWEELTDEFC
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggacccgctgctgccgggggtggtgaccgtgaaggaggagtggccgccgagctcgccg
ccgccggaggaggaggtggaggacatggacgcggcgccagcgggtgcgccgcggccgatg
gaggggctgcacgaggtcggcccgccgccgttcctgaccaagactttcgacctggtagcc
gacccggccaccgaccaggtcgtctcgtgggggcgcaccggcaacagcttcgtcgtgtgg
gatcctcatgtcttcgccgcggtgctgctcccgaggttcttcaagcacaacaacttctcc
agcttcgtccgccagctcaacacctatggtttcagaaagatcgatccagacagatgggag
ttcgcgaacgaaggtttcctaaggggccagaggcagctcctgcggctgatcaagcggcgg
cggccgccgtcctacctccccgggccccagcagcaggccctaggttcctgcctggaggtg
ggccagttcggcggcggcctggacgaggagatggaccggctgaggcgcgacaagaacatc
ctgctggcggaggtggggaagctgcggcaggagcagcagagcacgcgggcggacatgcgg
gccatggaggagcggctgcagcacgcggagcagaagcaggtgcagatgatggggttcctg
gcgcgggcgctgcagaacccggacttcttccagcagctggcccagcagcaggagcggcgg
cgggagctggaggacgccttctcctcgaggaagcggcggcggccgcccatcgacgcggcg
ccgttcgaggaggccagcggccgcccgcgggacgacgagccgccgctgctgttccggggg
tgcggcgggttcgaggcggggacctcggagctggagaacctggcgctcaacatccagggc
ctcgggaagcggaggcaggacgagaagcaggccccgggcggcggcggcggcgagacggcg
gagctgacggacgagttctgggaggagctgacggacgagttctgctga
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