Panicum virgatum (switchgrass): 120690655
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Entry
120690655 CDS
T07260
Name
(RefSeq) histone-binding protein MSI1 homolog
KO
K10752
histone-binding protein RBBP4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
pvir03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120690655
03083 Polycomb repressive complex
120690655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120690655
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
120690655
Histone modification proteins
HAT complexes
HATB complex
120690655
HDAC complexes
Sin3A-HDAC complex
120690655
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
120690655
PRC2.2
120690655
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
120690655
Heterochromatin formation proteins
Other heterochromatin formation proteins
120690655
Chromatin remodeling factors
NuRD complex
120690655
NuRF complex
120690655
NuRF complex (fruit fly)
120690655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
CAF1C_H4-bd
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_EML
WD40_RFWD3
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
eIF2A
WD_LRWD1
Beta-prop_HPS5
Beta-prop_RIG_1st
MIOS_WD40
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
120690655
NCBI-ProteinID:
XP_039829326
LinkDB
All DBs
Position
9N:15487311..15493787
Genome browser
AA seq
431 aa
AA seq
DB search
MPKAGGGAADEEEFRAEVEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDRA
EPPGKDHSVQKMILGTHTSDNEPNYLMLAQVQLPLDDAEADARHYDDDHADIGGFGAASG
KVQIVQQINHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRL
KGHNSEGYGLSWSSFKEGHLLSGSDDAQICLWDIKANSKNKSLDALQIFKHHDGVVEDVA
WHLRHEYLFGSVGDDHHLLIWDLRSPAPTKPVQSVVAHQGEVNCLAFNPFNEWVVATGST
DKTVKLFDLRKIDKSLHTFDCHKEEVFQVGWSPKNETILASCCLGRRLMVWDLSRIDQEQ
TPEDAEDGPPELMFIHGGHTSKISDFSWNPCEDWVLASVAEDNILQIWQMAENIYHDEDD
LLISDEPPKTS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggccggcggcggcgcggcggacgaggaggagttccgcgccgaggtcgaggag
cgcctcatcaacgaggagtacaagatctggaagaagaacacgcccttcctctacgacctc
gtcatcacgcacgcgctcgaatggccctccctcaccgtgcagtggctccccgaccgcgcc
gagccgccggggaaggaccactccgtccagaagatgatcctcgggacgcacacctccgac
aacgagcccaactacctcatgctcgcgcaggtccagctgcccctcgacgacgcagaggcc
gacgcgcgccactacgacgacgaccatgccgacatcggagggttcggcgccgcatccggc
aaggtacaaattgttcagcagataaatcatgatggagaggtcaatcgagctcggtatatg
ccccaaaattcatttataattgctaccaagacagttagtgcagaagtatatgtctttgac
tatagcaagcacccatcaaagcctccactagatggtgcatgcaaccctgatttacggctg
aagggacataactctgaaggatatggcttatcctggagtagttttaaagagggacatttg
ttgagtgggtctgatgatgctcaaatttgcttatgggacattaaagcaaatagtaaaaac
aaaagtcttgacgccttgcagatttttaagcatcatgatggcgttgttgaagatgttgct
tggcatttgaggcatgaatacttatttgggtcagttggtgatgatcatcatcttctgatt
tgggacctgcggtctcccgcccctactaagcctgttcagtcagtggtggcacaccagggc
gaggtgaactgcctggctttcaacccgttcaatgaatgggttgttgcaactggttctact
gacaagactgtcaaattatttgatcttaggaagattgataagtctctgcacacctttgac
tgtcacaaagaggaagtatttcaagttggatggagtccaaagaatgagactatacttgca
tcttgttgcctgggcagaagactcatggtctgggacctaagcaggattgatcaagaacaa
acaccagaggatgcagaagacggccctcctgagctcatgttcatccatggaggccatacc
agcaagatctctgatttctcctggaacccctgcgaagattgggtgcttgctagcgtcgct
gaagacaacatcctccagatatggcagatggctgagaacatctaccatgatgaagatgat
ctgctgataagtgacgagccaccaaagacatcttga
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