Panicum virgatum (switchgrass): 120690700
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Entry
120690700 CDS
T07260
Name
(RefSeq) protein argonaute MEL1 isoform X1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120690700
03036 Chromosome and associated proteins [BR:
pvir03036
]
120690700
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120690700
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120690700
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120690700
microRNA pathway
RISC loading complex
120690700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
ATG7_N
Motif
Other DBs
NCBI-GeneID:
120690700
NCBI-ProteinID:
XP_039829395
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All DBs
Position
9N:3989857..3998913
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AA seq
1054 aa
AA seq
DB search
MAYRGGGRGGRGGGGDRDRGDQRPPYGGGGGGSGFVWPPPPSTPRPVPVQYQVPMGYRAP
MVLPHQAAYGAPAAVYRAPASAGPPVSFSPAPRAVAVTIRAPPPSVSAAPAPAPRQGAQG
ATTLASEPAPASSAPSAAAVAKEVEKKLFVSETALAPPAAAAAAAVAAAQGAAASDAEDV
DLAPVSKKGLAHPARPGVGTAGKSVKIRANHFLVDVADNNLFHYDVAINPESKSRATNRE
VLNELIKLHGKSTLGGKLPAYDGRKSLYTAGSLPFDSEEFVVTLVDREKKEKERAEREYK
ITIRIAGRTDMYHLHQFLRGRQRDMPQETIQVLDVVLRESPSWNYVTVSRSFFSTTFGHR
GDIGEGLECWRGYYQSLRPTQMGLSLNIDISATSFFKPVTVIQFVEEFLSIRDTSRPLSD
RDRVKIKKALRGVRIETTHQQDQIRRYKITGVTPMPMSQLIFPVDDKGTRQTVVQYFWEK
YNYRLKYGSWPCLQAGSDSRPVYLPMEVCKIVEGQRYSKKLNDRQVTNILRATCKRPQER
EQSIRDMVLHNNYVEDKFAQEFGIKVCNDLVSVEARVLPPPLLKYHDSGREKTCAPSVGQ
WNMINKKMINGGTIDNWTCLNFSRMRPEEVQRFCMDLTHMCNATGMNVNPRPFVEVKSAA
PNHIENALRDVHRRATQMVAQQGTGNQLQLLIVILPEVSGSYGKIKRVCETEIGIVSQCC
LPKHASRPNKQYLENVALKINVKVGGRNTVLERAFVRNGIPFVSEVPTIIFGADVTHPPP
GEDSASSIAAVVASMDWPEITKYRGLVSAQPHRQEIIEDLFTVSKDPQKGNNVNGGMIRE
LLIAFRRKTNRRPERIIFYRDGVSEGQFSHVLLHEMDAIRKACASLEEGYLPPVTFVVVQ
KRHHTRLFPEVHGRRDMTDRSGNILPGTVVDQRICHPTEFDFYLCSHAGIQGTSRPTHYH
VLYDENHFTADCLQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGS
TPGSSGQTVAREGPVEVRQLPKIKDNVKDVMFYC
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggcctaccgcggcggcggcaggggaggccgcggcggcggcggcgaccgcgaccgcggg
gaccagcgcccaccgtacggaggaggcgggggcggcagcggcttcgtgtggccaccccca
ccgtccacgccgcgcccggtaccggtgcagtaccaggtgccgatgggctaccgcgcgccc
atggtgctgccgcaccaggccgcgtacggggcgccggcggccgtgtaccgggcgcccgcg
tccgcggggcctccggtctccttctcgcctgcgcctcgtgcggtggcggtcaccatccgg
gcgcctcctccctcggtgtcggcggctccggctccggctccacggcagggggcacagggc
gccaccacgctggcgtccgagccggccccggcctcctccgcgccgtctgccgcggcggtg
gcaaaggaggtcgagaagaaactgttcgtgtccgagaccgcgctggcgccgccggctgcg
gctgctgctgcggccgtggcggccgcgcagggggccgctgcctctgacgcggaggacgtc
gatctggcgccggtctccaagaaggggctcgcgcaccctgctcggcctggcgtcggcacc
gccggcaagagtgtgaagatccgcgcgaaccacttcctcgtcgacgtcgccgacaacaac
ctcttccactacgatgttgctattaatcctgagtcgaagtcaagagcaacgaacagggaa
gttcttaatgaactcatcaagttgcatgggaagtcaactctgggtggcaaattgcctgcc
tatgatggacggaagagtctgtatactgctggttcccttccttttgattcagaggagttt
gtggttaccctggttgatcgggaaaagaaggagaaagaaagggcggagagagaatacaag
atcacaattcgaattgctggaagaacagacatgtaccaccttcaccagtttctgcgtgga
agacagagggacatgcctcaagagaccatacaagtacttgatgttgtcctcagggagtct
ccgtcttggaattatgttacagtatccagatcctttttctctactacttttggtcacaga
ggagacatcggcgaggggcttgagtgttggagaggttactaccagagcctacgcccaaca
caaatggggctttcactgaatatagatatatctgcaacatcattttttaagcctgtgaca
gtgatccaatttgtggaggagttcctgagcatacgtgatacctctcggcctttgtcagac
agagatcgtgtgaagataaagaaagcacttcgtggagttcgcattgaaacaactcatcaa
caggaccagatcagaagatacaagataactggggttactcccatgcctatgagccagctg
atatttcctgttgatgacaagggaactagacagactgttgtgcagtatttttgggaaaaa
tataactacagattgaagtatggttcttggccctgtcttcaggctggcagtgattcgcgg
cctgtatatttgcctatggaggtttgcaagattgttgaaggtcagagatattctaagaag
ctaaatgacagacaagtgaccaacatacttagagcaacctgtaaacgtcctcaggagagg
gagcagagcatccgtgatatggttctacataacaattacgtggaggataagtttgctcag
gaatttggcatcaaagtctgcaatgaccttgtttctgttgaagcccgcgtgctgcctcca
cccttgttgaaatatcatgactctggtagggagaaaacctgtgcgccaagtgttggacaa
tggaacatgatcaacaagaaaatgatcaatggaggaactattgataactggacttgtttg
aacttttcacgcatgcgtcctgaggaggtacagaggttctgtatggatctgactcatatg
tgcaatgccactggaatgaatgtcaatccacgtccatttgttgaagtcaagtcagctgct
cctaaccatatagagaatgcattgagagatgtacacaggagggccacacaaatggttgcc
caacagggaacgggaaatcagctacagcttctaattgtaattctgcctgaagttagtggt
tcttatggaaaaattaaaagagtctgtgagactgaaattggtattgtatctcaatgttgc
ttgccaaagcatgctagcaggccaaacaagcagtatctggaaaatgttgcactcaaaatc
aatgtcaaggttggagggcgcaacacagttcttgagcgagcctttgtacgcaatggcata
ccctttgtgtcagaagtcccaactatcatctttggcgctgatgtcacacacccaccacca
ggagaggactctgcatcatccattgctgctgtggtggcatcaatggactggccagaaatc
accaagtacagaggtctggtttctgctcaaccacatcgacaagagataatagaagatcta
ttcactgtcagtaaagatccgcagaaggggaacaatgttaatggtggcatgatcagggag
ctactgattgctttccgcaggaaaacaaaccgcaggcctgagaggataatattctacagg
gatggtgtaagtgaaggtcaattcagccatgtactgcttcatgaaatggatgctatcaga
aaggcttgtgcctctttggaggaaggatatctacccccagtcacatttgtggttgtccag
aaaaggcatcacacgaggcttttccctgaggttcatggaaggcgtgatatgactgacaga
agtggaaacattcttccaggaactgtggttgaccaaaggatttgtcatcctactgagttt
gatttctacttgtgtagtcatgctggtattcagggaacaagtcggcccacccattaccat
gtcctttatgatgagaatcattttactgctgactgcctacagtcactgaccaacaatctt
tgctacacctatgctcgttgcacccgtgctgtgtcagtggtcccacctgcctactatgcc
caccttgccgcattccgtgctcgctactatgtggaaggagaaagctcggacggtggctca
acccctggcagcagcgggcagacagtagctcgtgagggacctgtggaggtgcgtcaactt
ccgaagatcaaggacaacgtcaaggacgttatgttctactgctga
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