Panicum virgatum (switchgrass): 120690843
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Entry
120690843 CDS
T07260
Name
(RefSeq) endoribonuclease Dicer homolog 1-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120690843
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120690843
microRNA pathway
RISC loading complex
120690843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
dsrm
DND1_DSRM
DEAD
Helicase_C
ResIII
Dicer_PBD
SNF2-rel_dom
SLFN-g3_helicase
Cas3-like_C_2
SWI2_SNF2
Kinesin
Motif
Other DBs
NCBI-GeneID:
120690843
NCBI-ProteinID:
XP_039829623
LinkDB
All DBs
Position
9N:81039273..81050993
Genome browser
AA seq
1922 aa
AA seq
DB search
MAGGGGDAAAGEHASAAYWYDACEDGASLLCGIDFATSTDFDPGLIPAMDCGADDGFVAE
IDRILESINAETAPAPPPPALAPAPAAPPQPQPQLQEAVAIVAHNAVAVVDAAQRTHGVE
ARKEPRRESPVAAASGGGECRDGKRQRLTASGTGGPRQDWRRRPVPRPPPSSRGWEDRRG
RREHERPRKRNRDGHHTHDHLRREARGFWERGRGGKMVFRHGMWEAEVDRQGKRARMQEG
SPAEGKVEVDQTVASQKEKPVTEEQARQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLI
KSICDKMRKENKKMLAVFLVPKVPLVYQQAEVIRERTGYCVGHYCGEMGQDFWDSRKWQC
EFESKQVLVMTAQILLNILRHSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKD
KRPVVFGMTASPVNLKGVTSQEDCAIKIRNLESKLDCIVSTIKDRKELEKHVPMPSEVIV
HYDKAATLLSFHEQIKQMEATVEEAALSSSKRTKWQFMGARDAGSRDELHLVYGVSERTE
SDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQVDVKFQESYLKKVV
DLLHCQLTEGAAMKNENNDVEMPNAENHKPNELEEGELPDSHAVSVGEHVDEVIGAAVAD
GKVTPRVQALIKILLMYQHTDDFRAIIFVERVVTAFVLPKVFAELPSLGFIRCASLIGHN
NNQEMRSCQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG
RARKPGSDYILMLERGNLSHEAFLKHARSSEETLRKEAIERTDLSHLDATSMLSPVDTSP
DSMYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMQKHEKPEGSTEYSCKLQ
LPCNAPFEKLEGPMCSSIRLAQQAVCLAACKKLHEMGAFTDMLLPDRGSGEREKAEQNDE
GDPLPGTARHREFYPEGVAEILRGEWILSGRDGCQSSQFIKLYMYSVNCVNIGTSKDPFV
TQLSNFALIFGNELDAEVLSTTMDLFVARMMITKASLVFRGPIEITESQLVLLKSFHVRL
MSIVLDVDVDPLTTPWDPAKAYLFVPVGAEKVMDPLREIDWTLVNSIVNSDAWNNPLQRA
RPDVYLGTNERTLGGDRREYGFGKLRNGSAFGQKAHPTYGIRGAIADFDVVKASGLVPAR
DRGHFNDYQNQGKLFMADSCWDAKDLAGMIVTAAHSGKRFYVDSICYNMNAENSFPRKEG
YLGSLEYSSYADYYKQKYGVELIYKKQPLIRARGVSYCKNLLSPRFEHSEANNGEFSENL
DKTYYVYLPPELCLVHPLPGSLIRGAQRLPSIMRRVESMLLAIQLKDIIGYPVPANKILE
ALTAASCQETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMILYQY
ALNKSLQTYIQADRFAPSRWAAPGVLPVFDEETRDSEPSIFEESSPRRELRKDSYEDYAD
SMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMRWIGIHAELDPQE
IPTSKPYIIPETIMKSIDFDTLEGALGIKFQNKGLLVEAITHASRPSSGVSCYQRLEFVG
DAVLDHLITKHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQ
IREFVKDVQEEISKPGFNSFGLGDCKAPKVLGDIFESIAGAIFLDSGYDTSIVWKVFQPL
LDPMVTLDTLPMHPVRELQERCQQQAEGLEYKASRAGNVATVEVFVDGIQIGVAQNPQKK
MAQKLAARNALVVLKEKETAAKKDTEKDGEKKNGSQMFTRQTLNDICLRRQWPMPQYRCV
NEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNRNYQHKPD
GK
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggaggcggcgacgccgccgccggcgagcacgcgtcggcggcctactggtac
gatgcctgcgaggacggcgcctcgctgctgtgcggcatcgacttcgccacgtccaccgac
ttcgacccgggcctcatacccgcgatggactgcggcgccgacgacggattcgtcgccgag
atcgaccggatactcgagagcatcaacgccgagaccgcccccgcgccgccgcctcctgcg
cttgcgcccgcgcccgcggctccgccgcagccgcagccgcagttgcaggaggcggtcgcg
atcgtggcccacaatgcagtggccgtggtggacgcggcgcagaggacccatggcgtcgag
gcgaggaaggagcccaggagggagtccccggtcgccgcggccagtggcggcggggagtgc
agggacgggaagcgccagcgtctcaccgcgtctggtaccgggggaccccgccaagactgg
cggcgccggccggtgccgcgaccgccgccttcctctcgcggttgggaggaccggcgtgga
aggcgggagcacgagaggcctcgtaaacgcaaccgcgacggtcatcacacccatgatcat
ctccgacgcgaggctcggggtttctgggagcgtggccgcggtggcaagatggtgttccgc
catggcatgtgggaggctgaggtggatcgccaaggaaagcgtgccaggatgcaggaggga
agccctgcggagggtaaggtggaggtggatcagactgtagcctcgcagaaggagaaacct
gtcactgaggagcaggcgaggcagtaccagctcgaggtgcttgagcaagcaaagagcagg
aacacaattgccttccttgagactggtgctgggaagactctcatagctgttctgctcatc
aaaagtatttgcgataaaatgcgcaaggagaataaaaagatgcttgctgttttcttggtg
cctaaggtgcctcttgtgtatcagcaagctgaagtgatacgcgagaggactggctattgt
gttgggcactactgtggggagatggggcaggatttctgggattctagaaaatggcaatgc
gagtttgagtcaaaacaggtacttgttatgacagctcagattttgctgaacatccttagg
cacagtattattaaaatggatgccatacatcttctgattttagatgagtgccatcatgca
gtgaaaaagcacccatattctctagtcatgtcagaattttatcacaccactccgaaggac
aagaggccagttgtgtttggtatgacggcttcacctgttaacttaaagggagtgactagc
caagaagattgtgctatcaaaatacgaaatctcgagagtaaactggattgcatagtatct
acaatcaaagaccggaaagagcttgagaaacatgttcccatgccatcggaagtcattgtc
cactatgacaaagcagccactcttttgtctttccatgaacagatcaaacaaatggaagct
acagttgaagaagctgcactttctagttctaagagaactaaatggcagttcatgggagct
agggatgctggctctagagatgagctgcaccttgtctacggtgtttctgagcgtacagaa
agtgatggtgcagctaatttaattcagaagttgagagctataaattatgctcttggtgaa
ttaggacaatggtgtgcttacaaggttgcacagtcatttttgacagcactacagaatgat
gagagagcaaactatcaggttgatgttaagtttcaagagtcatatttgaaaaaggttgtt
gatttgttacactgccagttgactgaaggggctgcaatgaaaaatgagaataatgatgtt
gaaatgcctaatgctgaaaaccacaagcctaatgaacttgaggagggggagctacctgac
agtcatgctgtttctgtaggtgaacatgtagatgaagttattggtgctgcggtggctgat
gggaaagttactcctagggtgcaggcattgatcaaaatacttctcatgtatcagcacact
gatgattttcgtgctatcatctttgtagagcgagtggttacagcatttgttctccctaag
gtttttgctgagcttccatccttaggctttatacgatgtgcaagcttgataggtcataac
aataaccaagagatgcggtcatgccaaatgcaggatacaattgcaaaatttcgtgatggc
cgtgttacactgctagttgcaactagtgttgcagaggaaggacttgatattcgacagtgc
aatgttgtcattcgctttgaccttgcaaagactgttttggcttacatacagtctcggggt
cgtgctagaaagcctggatctgactacatattgatgcttgaaaggggaaatttgtcgcac
gaagcgttcttgaaacatgctcggagtagtgaggagacattgagaaaagaagctattgag
agaactgatctcagccatcttgatgctacttctatgttaagccctgttgatacatcacct
gattctatgtatcaggttgaatccacaggtgctgttgtcagtttgaactcagcagttgga
ctcatacatttttactgctcacagctgccaagtgacagatactcgattcttcgtccggaa
tttattatgcagaagcatgagaagccagagggttcaacagaatattcttgcaagcttcag
ctcccttgtaatgctccatttgagaagcttgaaggccctatgtgcagttcaatacgtctg
gcacaacaggctgtttgtttagctgcttgtaagaagttacatgaaatgggtgccttcaca
gatatgcttttgcctgatagaggaagtggggaaagagagaaggcggaacaaaatgatgaa
ggtgatccactccctggaacagcacgccatagagaattctatcctgaaggggttgctgaa
attctgcggggagagtggattttatctggaagagatggttgccaaagctcgcagtttatt
aagttatatatgtattctgtaaactgtgtgaacattgggacttcaaaggacccttttgtt
acacaactttcaaattttgctcttatttttggcaatgagctggatgcagaggttttatcg
acgacgatggatctctttgttgctaggatgatgataacaaaggcatctctcgtattccgt
ggaccaattgaaattacagaaagtcagctggtcctgctgaagagctttcatgttaggctt
atgagcattgtacttgatgttgatgttgatcccttaacaacaccttgggatccagcaaaa
gcatacctttttgttcctgttggggctgagaaagtcatggatcctttaagagagatagat
tggaccttagttaacagcattgtgaactctgatgcctggaacaatcctcttcagagggca
cgcccagatgtctatctgggcactaatgaaaggactcttggcggagataggagggaatat
gggttcgggaaattgcgtaatgggtctgcttttggacagaaggcccatcctacttatggt
attagaggcgccattgctgattttgatgttgtcaaagcatctggattagttcctgctcgt
gatagggggcattttaatgattatcaaaaccaaggcaagttgttcatggcagattcatgt
tgggatgctaaagatcttgctggaatgattgtaactgctgcccactccggaaagaggttc
tatgtggacagtatttgctacaacatgaacgcagaaaattcattccctaggaaagagggc
taccttggttcattggagtacagctcatatgctgattactacaagcagaagtatggcgtg
gagttaatttataagaaacagcctcttatacgggcacgtggtgtttcatattgcaagaat
ctactttctcctagatttgagcattctgaagctaacaatggagagttctcagagaacctt
gacaaaacatactatgtatatttaccacccgaattgtgccttgtgcatcctcttcctgga
tcacttattcgtggagctcagaggttaccctcgataatgagaagggtggagagcatgctt
cttgcaattcaactgaaggacataattggttatccggttcctgcaaataagatattagaa
gccttgactgctgcatcatgccaggaaactttctgctatgaaagagcggagctgctgggt
gatgcatacttgaaatgggttgttagtagataccttttcctaaaatatcctcaaaagcat
gaggggcagctcacaaggatgcggcagcagatggttagcaacatgattctgtaccaatac
gctctgaataaaagcctccaaacttatatccaagcagatcgatttgctccatcaagatgg
gcagctccgggagtgttgcctgtatttgatgaagaaacaagagattctgaaccatccatc
tttgaggaatctagtcctcgtcgtgaattacgaaaggactcttatgaggactatgcagat
agcatgcaagaagatggtgaaattgagggagattctagctgctatcgtgttctctctagc
aaaacattagcagatgttgtggaagcacttattggtgtctactatgtagcaggagggaaa
atcgctgcgaaccacctgatgagatggatcgggatccatgcagagttggatccccaggag
atccctacttcaaagccatatatcatacctgagaccataatgaagagcatcgattttgac
acattagaaggtgcactcggtatcaagtttcagaataaaggcttacttgttgaggctatc
acacatgcatcaaggccatcatctggtgtttcctgttaccagcgcttggaatttgttggg
gatgctgtgttggatcatctaattacgaaacacttatttttcacttatactgacctacct
cctggccgattgactgacttgagagctgcagctgttaataatgagaactttgcaagggtt
gctgttaagcataagctgcatgtacatcttcgccatggatcgtctgcattggagacccag
attcgagagttcgtaaaggatgtccaggaggagatttcaaaaccaggtttcaattctttt
gggcttggggattgtaaggctcctaaggttcttggagacatttttgagtctattgctggt
gcaatattcctggatagtgggtatgatacctcgatagtctggaaggtttttcagccgtta
cttgatccaatggtaacgctggacacccttccaatgcatcctgttagggagctccaagag
cgctgccagcagcaagctgaaggattagaatacaaagcatcccgtgcaggcaatgttgct
accgttgaagtctttgttgatggtattcagattggtgtagctcagaacccacagaagaag
atggcacaaaagttggcagcgagaaatgcgcttgttgtcctgaaggagaaggaaactgca
gcgaagaaagataccgaaaaggatggtgagaagaaaaatggttctcagatgttcactagg
cagaccctgaacgacatctgcttgagaaggcagtggccaatgccacaatacaggtgcgtt
aacgagggcggccctgcccatgccaaaagatttgtttattcagtaagggtgaatacatct
gaccgtggatggactgacgagtgcattggagagccaatgccgagtgtgaagaaggctaag
gactctgctgccgttcttctccttgagcttttgaataggaattatcaacacaagcctgac
ggcaaatag
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