Panicum virgatum (switchgrass): 120690852
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Entry
120690852 CDS
T07260
Name
(RefSeq) protein argonaute MEL1-like isoform X1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120690852
03036 Chromosome and associated proteins [BR:
pvir03036
]
120690852
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120690852
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120690852
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120690852
microRNA pathway
RISC loading complex
120690852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ASFV_p27
Motif
Other DBs
NCBI-GeneID:
120690852
NCBI-ProteinID:
XP_039829631
LinkDB
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Position
9N:complement(49468341..49474369)
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AA seq
510 aa
AA seq
DB search
MTEADGLKHNIQPPFEDFLCPDKCDHLLKLGWGSQLPYMKPYNIPSGEYSKLFDENGNYK
LSNKHNKDMNLASAVEGAVVDHKAEVAFNIPDTLAVNVNSAEYNTLEESGEPQLENCSES
NDLDLVEVEQETTIHWACISYSIMDQRQLLRFFTRLRAVFMANGMYLNSMPIKMELVDSA
ITAESLSQTWSVLCKSASELLTSVGIKGAQIEFVLVILPECRDFDEEVEKVFKNLGVVYQ
LCLPLTIRIPTNGHLKKFARQIKFKVSKHGMVTPFVSEAPTILFGADISHCAPEEGSRSV
ASVVASLDWPKVSKYEARVASQPHHEVIIRNLFNRYGGMVSKLLLSFYSTTKKIPQRMIF
FRHGIIEGQESHICQQEIDAIKQDCAFLGKVPTLTYVVTQSLNMEFKGKKRLRVQQDTSY
PAKFEVLCDHGPFEGINMVVHYRVVHDENYLTAHELESIIIRLSQLRDRQVYPEISMIPP
AHFARLVAHYHMHSEAYEGPSLGGLVIQHY
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagctgatggacttaaacataacatccaacctccgtttgaagacttcctctgc
cctgataaatgtgaccaccttctcaagttaggatgggggtcacaactgccgtacatgaaa
ccctataacatcccttcgggtgagtactccaaattgttcgacgaaaatggcaactacaaa
ctcagcaacaagcataacaaggacatgaatctggcctctgctgttgaaggtgctgttgtt
gaccataaggctgaagtggctttcaacatacctgatacccttgcagtgaatgtgaattct
gcagagtataacactcttgaagagagtggggagccacaactcgaaaattgcagtgagagt
aatgatttggaccttgttgaggttgaacaagaaaccacaatacactgggcatgtataagt
tattcaattatggatcagaggcagttgctcagatttttcactaggctccgtgctgtgttc
atggccaatggaatgtatttgaattcaatgccaataaagatggaactggtggactctgct
attactgctgaaagtctttcccagacttggtcggttttgtgcaaaagtgcctcagaactc
ttaactagcgttggaattaagggagcacagatagaatttgtacttgtaattctgccagag
tgtagggattttgatgaggaagtggaaaaggtttttaagaaccttggagttgtatatcaa
ttgtgtttgcccctaactattagaatcccaaccaatgggcatctgaagaaattcgcacgt
caaattaagttcaaggtttcaaagcatggcatggtgacaccatttgtgtcagaggctcca
acaattttgtttggtgctgacatctcacattgcgcaccagaagagggttcaagatctgtt
gcatctgtggtcgcatcattggactggccaaaagtcagtaagtatgaagctcgagtcgct
tctcaaccacatcatgaagtgatcataagaaatctctttaatagatatggtggcatggtt
agcaaacttctcctaagcttctactcaacaacaaaaaaaatccctcaaaggatgatcttc
ttcaggcatggcataattgaaggtcaagagagccacatttgccagcaagaaatagatgct
atcaaacaggattgtgcttttttggggaaagtaccaacactcacatatgttgtcacgcaa
agccttaatatggaatttaaaggaaagaaaagacttagagttcaacaagatacctcttac
cctgctaaatttgaggtcctgtgtgaccatggaccttttgagggaatcaacatggtggtc
cactatcgtgttgttcatgatgagaactatcttacagctcatgaacttgagtctataatc
atcaggctctcccaactccgtgatcgtcaggtgtatccagaaatatcaatgataccacct
gctcatttcgcccgtcttgtggcacactatcatatgcactctgaggcatacgagggacca
tcactgggcggtcttgtgatacaacactattga
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