KEGG   Panicum virgatum (switchgrass): 120690872
Entry
120690872         CDS       T07260                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    120690872
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120690872
   03036 Chromosome and associated proteins [BR:pvir03036]
    120690872
Enzymes [BR:pvir01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     120690872
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    120690872
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     120690872
    Noncanonical PRC1 (PRC1.1)
     120690872
    Noncanonical PRC1 (PRC1.3/1.5)
     120690872
    Noncanonical PRC1 (PRC1.6)
     120690872
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-RING_6 zf-RING_4 zf-C3HC4_4 zf-UDP zf-rbx1 zf-Nse NIDO zf-C3HC4_5 ZNF512_C2HC zf-RING_11
Other DBs
NCBI-GeneID: 120690872
NCBI-ProteinID: XP_039829669
LinkDB
Position
9N:complement(19617150..19625304)
AA seq 460 aa
MPAQKRPPAPSPSAAAGAGSPPPASSPPPPAAEPAEKKPKLEENGAEANGNANDSSAKVS
ASEASESESEDADAVNQEFIPVKLADIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDK
SMRLGNNECPACRTHCASRRSLRDDPNYDAMIAALYPDIDKYEEEELAFNEEENDRNKQI
QASIAEAFRKQSEVIGRKSTAKATAAAFVRRSRRNIRANGLSTYFRGRGRASSDDVALAC
SDDEEDGNGQILGKEESSAEESSPEKKQKRPPKWPTPRSSPARAACSEEAASDDKDDVGI
SRENFSTSPLRAWGKNGTRSQTRHSSFSGSNGRVVKGGRMIKLVECLRNSDDNDSERDIH
LCLLPLDGQTTPNLEKPYLCCGPTLSIKQLCQFVASQTSHKDEDVEIYARKPSYNDLVST
NTCDFDKARLVGEERLSDLRSSFTFPNGVLELVYAIKVAN
NT seq 1383 nt   +upstreamnt  +downstreamnt
atgcccgcccagaagcgcccgcccgcgccctccccctccgcggccgctggcgccggctcg
ccccctcccgcgtcctccccgccgccgcccgcggccgagcccgcggagaagaagcccaag
ctggaggagaacggcgccgaggccaacggaaacgccaacgattccagcgccaaggtgtcg
gcgtcggaggcgtcggagtcggagtcggaggacgcggacgccgtgaaccaggagtttatt
ccagtgaaattggcggacatacgcaaggaagtgcagtgtcccatatgcttaggcattatc
cggaagacgagaacagttatggagtgtctgcaccggttctgcagggaatgcattgacaaa
tccatgcgacttgggaataatgagtgcccagcatgccgcacacactgtgcaagtcggcgt
tctttgagagatgatcccaactatgatgccatgattgcagctctgtacccagatattgac
aaatatgaagaagaggaactagccttcaacgaagaggagaatgatcgcaataaacagatt
caagcatctattgccgaggcttttcggaaacaatcagaagttattgggcggaagtctact
gccaaagctactgctgctgcatttgtaagaagatcacgccgcaacattcgggccaatggg
cttagtacctattttcgtggtagaggaagagccagttccgatgatgttgcactggcctgt
tctgatgatgaagaggatggaaacggtcaaatcttgggtaaagaggagtcctctgctgag
gagagttccccagagaaaaagcagaaacgaccaccgaaatggccaacaccacgttcttct
cctgcccgagcagcatgcagtgaagaggctgcttctgatgataaggatgatgtaggaatc
tctagagaaaattttagcacatctccgctgcgagcatggggaaagaacggtactcgcagt
cagactcgacacagtagctttagtggttcaaatggcagggtggtcaagggtgggcgcatg
atcaagttggttgagtgtctgcgaaattctgatgacaatgatagcgagcgtgacatacat
ctttgtttgcttccactggatgggcaaactactccaaatctagagaagccatatctgtgt
tgcggcccaactctctccatcaaacagctttgtcagtttgtcgccagtcagacatctcac
aaggatgaagacgttgagatctatgcacggaagccttcatacaacgaccttgtcagcact
aacacatgcgattttgataaggcaaggcttgtaggggaggagcgcctttcagacttgcga
tcctcattcacatttcccaatggggttctggagttggtctatgccatcaaagtcgcaaac
tag

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