KEGG   Panicum virgatum (switchgrass): 120690938
Entry
120690938         CDS       T07260                                 
Name
(RefSeq) SKP1-like protein 1B
  KO
K03094  S-phase kinase-associated protein 1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03083  Polycomb repressive complex
pvir04120  Ubiquitin mediated proteolysis
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120690938
   04120 Ubiquitin mediated proteolysis
    120690938
  09126 Chromosome
   03083 Polycomb repressive complex
    120690938
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120690938
   04121 Ubiquitin system [BR:pvir04121]
    120690938
   03036 Chromosome and associated proteins [BR:pvir03036]
    120690938
Membrane trafficking [BR:pvir04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    120690938
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Adaptor protein
     120690938
   Cul7 complex
     120690938
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     120690938
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     120690938
SSDB
Motif
Pfam: Skp1 Skp1_POZ Methyltrans_RNA
Other DBs
NCBI-GeneID: 120690938
NCBI-ProteinID: XP_039829792
LinkDB
Position
2K:59897499..59899520
AA seq 120 aa
MIEDGCTDGGVPLPKIAGGVLAKVLEYCNKHTAASDKEEVERFDKAFIEAVDQGMLLDMV
LAANYLNVKGLLDLTCQTIADMIQNKSVEEIRRIFGPSKNDLTPEEEAEIRRENQWAFDD
NT seq 363 nt   +upstreamnt  +downstreamnt
atgatcgaggacggctgcaccgacggcggcgtcccgctccccaaaatcgccggcggggtc
ctcgccaaggtcctcgagtactgcaacaagcataccgccgcgtcggacaaggaggaggtg
gagaggttcgacaaggcattcatcgaggcggtcgaccagggcatgctgttagacatggtg
ctggccgccaactacctcaacgtcaaggggttgctggacctcacctgccagacgattgct
gacatgatccagaacaagtcggtggaggagatcaggcggattttcggtccctcaaagaac
gacttgacaccggaggaggaggcggagatccgcagggagaatcagtgggccttcgacgat
taa

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