KEGG   Panicum virgatum (switchgrass): 120690959
Entry
120690959         CDS       T07260                                 
Name
(RefSeq) TATA-box-binding protein 2
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    120690959
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pvir03000]
    120690959
   03021 Transcription machinery [BR:pvir03021]
    120690959
Transcription factors [BR:pvir03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    120690959
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     120690959
  RNA polymerase III system
    TFIIIB
     120690959
  RNA polymerase I system
    SL1/TIF-1B
     120690959
SSDB
Motif
Pfam: TBP DUF3378 DUF4295
Other DBs
NCBI-GeneID: 120690959
NCBI-ProteinID: XP_039829833
LinkDB
Position
9N:complement(14596204..14601455)
AA seq 200 aa
MAEPGLEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAV
IMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVG
SCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREE
TYTAFENIYPVLTEFRKVQQ
NT seq 603 nt   +upstreamnt  +downstreamnt
atggcggagccggggctcgagggcagccagccggtggatctgtccaagcacccctccggc
atcgtccccacgctccagaatattgtgtcaacagttaatttggattgtaaacttgacctc
aaagccatagctttgcaagcacgcaatgcagagtataatccaaagcgttttgctgcagtc
attatgagaataagagaacccaaaaccacggcactgatatttgcatcgggcaaaatggtc
tgtactggggcaaagagtgaacaacaatctaagcttgcagcaagaaagtacgctcgtatt
attcagaaacttggctttccagctaaatttaaggacttcaagattcagaatattgttggc
tcttgtgatgtcaagtttccaattaggcttgagggccttgcatattctcatggtgccttc
tcaagttatgaaccagaactgttccctggtctgatctatcgaatgaaacaaccaaagatt
gttcttttaatttttgtttcaggcaagattgttttgactggcgcaaaggtgagagaggag
acgtacactgcctttgaaaacatctatcctgtactgacagagttccgaaaagttcagcaa
tga

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