Panicum virgatum (switchgrass): 120690984
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Entry
120690984 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP155-like
KO
K14312
nuclear pore complex protein Nup155
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120690984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120690984
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120690984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
120690984
NCBI-ProteinID:
XP_039829856
LinkDB
All DBs
Position
9N:complement(73625276..73636287)
Genome browser
AA seq
1477 aa
AA seq
DB search
MAWAEDEAIGPDVASAGLHVSERIGRDAAAQPDLEEALEASRYASHPYSSHPKEWPSLVE
VAETRQLPPMLIERYNAAAGEGTALCGIFSDIHRAWATVDNSFFIWRFDKWDGQCQEHNV
DEQAICAVGLARAKPGIFIEAIQYLLVLATPVELVLAGVCCSASADGTDPYAELSLKPLP
EYMIATDGVTMTCITCTDKGQIFLAGRDGHIYELQYTTGSGWRKRCRKVCLTTGIGSLLS
RWVLPNAFKFSTVDPIVDMVIDDERNTIYARTEGMKLQLFDLGANGDGPLTKVTEEKNIV
DPRDAPYGGRRRNAQRSAHSPKPSIVCISPLSAMESKWLHAVAVLSDGKRLFLTTSGGSG
SSVGLNSSLQRPTCLKIVATRPSPPLGVGGGLTFGAVAAAGRAHPEDLALKVESAFYSAG
ALIMSDSSATAMSSLLAVQKDSAAQLSLPSTFGTASRSSRALRETVSALPVEGRMLCASD
VLPLPDAAFTMQSLYADVECFTGFRKPSEKASIKLWAKGDLPTQHILPRRRVVVFNTMGL
MEVIFNRPVDILRKLFDGNTLRSQIEEFFSRFGAGEAAAMCLMLAAKLLYAEDSPISNAV
SEKAAEAFEDPGLVGMPQIDGTTALSNTRTQAGGFSMGQVVQEAEPLFSGAYEGLCLCSS
RLLYPIWELPIMVIRGPGGTNEHEDGIVVCRLSAGAMKILESKIRSLETFLRSRRNKRRG
LYGYVAGLGDSGSILYKTGPIIGSGGRVNGRSPYNSQIQDTNPTDQSASSKKPRLLYTSA
ELTAMEVRAMECLRRLLRRSGEALFLLQLICQHNVARLAQTLGNDLRKKLVQLTFHQLVC
SEDGDQLAMRLISALMEYYIGPEGRGTVEDISTKLREGCPSYFNESDYKYYLAVECLERA
SMTNSPEERDILAKDAFNLLTKIPDSADLSAICKRFENLRFYEAVVRLPLQKAQALDSNA
DVINGQIDPKHNDMILYQREQCYEIVLNALRTLKGAGQSGMQGADKSSGLATAVDPASRS
KYIKQIIQLSVQWPDTVFHEHLYRTLIELGLENELLEYGGSDLVSFLQSAGRKHQEQVRA
GSSLTTGAAKLQDLGAPISTSQTKYLELLARYYVLKGEHIAATRMLLILAERQCSNSEEA
PTLEKRYEYLRNAVLQAKSASIAADSSRNPIDSSTVDLLEGKLAVLRFQMQIKQELELMA
VRVENTPSSSESPCDPFPRDNILADAETAKAAKDKAKELSLNLKSITQLYNDYAVPFNLW
EVCLEMLSFANYSGDADSKIVREIWARLLDQALTRGGVAEACSVVKRVGSKLDPADGGCL
PLDIICLHLEKAALDRLSSGEELVGDDDVARALLGACKGLPEPVLAVYDQLLSNGAVMPS
LNLKLHLLRSVLAILREWGMSVIAQRLGTTSAGASFFFDGTFSLSQTGTANQGARDKIIS
LANRYMTEVRRLNLPQNQTEGVYRGFRELEEKLLSPY
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgggcggaggacgaggccatcggccccgacgtggcctcggcggggcttcacgtc
tcggagcggatcggccgcgacgccgccgcacagcccgacctggaggaggccctcgaggcc
tcgcgctacgcgtcccacccctactcctcgcaccccaaggagtggccttctttggtggaa
gttgctgaaactcgtcagctccctcctatgttgattgaaagatacaatgcagcagctggt
gaaggaacagccctttgtgggatcttttctgacatacaccgggcctgggcaacggtagac
aattcatttttcatctggcgttttgataaatgggatgggcagtgtcaagagcataatgtg
gatgagcaagcaatttgtgctgttggccttgctagggcaaagcctgggattttcattgaa
gccattcaataccttttagttttagcaactcctgttgagctggtacttgctggagtttgc
tgttctgctagtgctgatggaacagatccttatgctgagctttcattaaaacctttacct
gagtacatgattgccactgatggtgtcacaatgacatgcatcacatgtaccgataagggc
caaattttcctagctggacgtgatgggcatatatatgaattgcagtatacaactggttca
ggctggcgtaaacgctgtcgtaaagtatgtcttactactggcattggcagccttctttcc
aggtgggtcctgccaaatgcattcaaattctcaacagttgatcctattgttgatatggtc
attgatgacgagaggaacactatatatgctcgcaccgaaggcatgaaattgcagttattt
gatttaggagctaatggtgatgggcctttgacgaaagtcactgaagaaaagaacattgtt
gatccacgagatgcaccctatggtggtcgaaggcgtaatgcacaaagatctgctcattca
ccgaaaccatcaattgtctgcatctcacctctatcagctatggaatcgaaatggctccat
gctgttgctgttttatcagatgggaagagattattccttactacatcaggtggaagtggc
tcttcagttggattgaacagtagtttacagaggccaacctgtttaaaaattgttgctact
aggccctccccacccctgggggttggtggtgggcttacatttggtgctgttgctgcggct
ggcagagctcatcctgaggatctagctttaaaagttgagtctgcgttctattctgctggt
gctcttataatgtcggattcatccgctacagccatgtcatctcttctggctgtgcagaaa
gattcagctgcgcagttatcccttccaagtaccttcggaacagcttctagaagctcccga
gctctaagagaaacagtctctgctttgcctgttgagggtcgaatgctatgcgcctctgat
gtcctcccacttccagatgctgctttcacaatgcagtctttatatgctgatgtggaatgc
ttcacgggtttcagaaaaccttctgagaaggcatctataaaactgtgggctaaaggagat
cttcctacccagcatatcttacctcggaggagggttgttgtattcaatacgatgggtttg
atggaggtaatttttaacaggcctgttgatattctaagaaaattgtttgatgggaacacc
ttgaggtcacaaattgaagaattctttagccgcttcggtgctggagaggctgcagcaatg
tgcttaatgctagccgctaagctactttatgctgaagatagtccgataagcaatgctgtt
tctgagaaagctgctgaggcatttgaggaccctggacttgttgggatgcctcaaattgat
ggcaccactgctttatctaatacaaggactcaggctggaggctttagtatgggtcaagtt
gttcaagaagcagaacctttgttttctggtgcatatgaagggctctgtttgtgctcttca
agactactatatcccatttgggagcttcctattatggtgattcgaggacctgggggtact
aatgaacatgaggatggcatagttgtttgcagactgtcagctggggccatgaaaattctt
gagagtaagattcgttcactggaaacatttttaagatccagaagaaacaagagaagaggc
ttgtatggctatgttgctggcctgggcgattctggctccatactctacaaaacagggcct
attattggttctgggggacgtgtcaatggaaggagtccgtacaactcccagattcaagat
acgaaccccacagatcaatctgcatcaagtaaaaagccgaggttgctttatacatcagca
gaactaactgctatggaggtgagggcaatggagtgtcttaggcggttgcttaggagatct
ggcgaagcactctttttgcttcaacttatttgccagcataatgttgcccgcttggctcag
acactgggcaatgacttacgcaagaaattagttcaactaacatttcatcaattggtatgt
tcagaggatggcgatcagcttgcgatgcgccttatttctgcactcatggagtactatatt
ggcccagagggccgaggaactgttgaggatatcagtactaaattgagggagggttgccct
agttacttcaatgagtcagactacaaatattacttggcagtggaatgccttgagagagca
tccatgactaatagccctgaggaaagagatattcttgctaaagatgctttcaacctctta
actaagattccagactctgctgacttgagtgccatatgcaagagatttgagaacctaaga
ttttatgaggctgtagtccggttgcctctgcagaaagctcaagcacttgactccaatgct
gatgttatcaatggtcaaattgatccaaagcacaatgatatgatactgtatcagcgtgaa
cagtgctatgagatagttctgaatgctctacgcaccctcaagggtgccgggcaaagtgga
atgcaaggtgcagataagtcctctggtttagcaactgctgttgatccagcttctcgaagc
aagtatatcaaacagatcatccaacttagcgtccaatggccggacacagttttccatgag
catctatacaggacactgatcgagctcggtcttgaaaatgagcttttggagtatggtggt
tctgatttggtttcctttcttcagagtgctggtcgtaagcatcaagaacaggttcgggcg
ggttcttcacttacaacaggagctgctaagttgcaagatttaggtgcacctatctcaact
agtcaaacaaagtatctcgagctcctagcaaggtactatgttcttaagggggagcatatt
gctgctaccaggatgttgttaatattggcagagagacagtgctccaattctgaagaagcc
ccaactcttgaaaaaaggtatgaatatctcagaaatgcagtgcttcaggccaaaagcgca
agcatcgctgctgattcatctagaaatcctattgatagtagtacggtggatttacttgaa
ggcaaacttgcagtgcttcgcttccaaatgcaaatcaaacaagaactggagctcatggca
gtgcgggttgaaaatactccgagcagttccgaatcgccatgtgatccattccctcgtgac
aacattcttgctgatgcagagactgctaaagctgctaaggataaagcaaaagagctttca
ttgaatctcaagagtatcactcaactatataatgactatgctgttccatttaatctctgg
gaggtttgcctggaaatgctgagctttgctaattactctggagatgctgatagcaaaatt
gttcgagaaatttgggctagactccttgaccaggcacttacaagaggtggtgttgcagaa
gcatgttctgtggtgaaaagagtaggctcgaaacttgatcctgcagatggaggttgttta
cctttggatataatatgccttcaccttgagaaggctgcattggatagattaagttcagga
gaagaattggttggtgatgatgatgttgcaagagctcttcttggtgcctgtaaaggtctt
cctgaaccagttcttgctgtgtatgatcaactgttatcaaacggcgcagtcatgccgtca
ctaaatcttaagttgcatcttctgagatcagttcttgcgatccttcgtgagtgggggatg
tctgtcattgcacagagactaggcaccacaagtgctggggcttcattcttttttgatgga
acattttcgctgagccaaacaggaactgcaaatcaaggtgctcgagataaaataattagt
ttggcgaacaggtatatgactgaggtgaggcgattaaatcttccacagaaccaaacggag
ggcgtctaccgtggtttccgtgaactcgaggaaaaattactctctccttattag
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