KEGG   Panicum virgatum (switchgrass): 120691112
Entry
120691112         CDS       T07260                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03030  DNA replication
pvir03410  Base excision repair
pvir03420  Nucleotide excision repair
pvir03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120691112
   03410 Base excision repair
    120691112
   03420 Nucleotide excision repair
    120691112
   03430 Mismatch repair
    120691112
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvir03032]
    120691112
   03036 Chromosome and associated proteins [BR:pvir03036]
    120691112
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120691112
DNA replication proteins [BR:pvir03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    120691112
  DNA Replication Termination Factors
   ELG1-RFC complex
    120691112
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    120691112
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     120691112
  Check point factors
   HRAD17(Rad24)-RFC complex
    120691112
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 AAA_22 Sigma54_activ_2 DUF815 AAA_16 RuvB_N RsgA_GTPase Mg_chelatase AAA_24 ABC_tran AAA_2 AAA_5 AAA_29 AAA_11 nSTAND3 nSTAND1 ATPase_2 DUF2959
Other DBs
NCBI-GeneID: 120691112
NCBI-ProteinID: XP_039830017
LinkDB
Position
9N:complement(4663666..4668081)
AA seq 354 aa
MLWVDKYRPKTLDKVTVHDQVAQNLRKLVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG
AGAEKVRMENKTWKIDTGTRTLEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN
RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRVNAPSEDQIIQVLEFIGKKENLQLPAGFAARIAAQSNRNLRRAILFFETCKVQQY
PFTSNQVAPPLDWEQYVSEISTDILTEQSPKRLYAVRQKFYELLVNCIPPESILKKLLAE
LLKKLDADLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVASFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtggacaagtaccggcccaagaccctagacaaggtcaccgtccacgaccag
gtcgcgcagaacctcaggaagctcgtttcggagcaggattgtccgcacttgctgttctat
gggccgtcggggtccgggaagaaaaccctaatcctggcgcttatcaagcagatgttcggc
gccggcgcggagaaggttaggatggagaacaaaacatggaagatcgataccggaacaaga
acacttgagatagagttggcgatgttgtcgagtgctcatcatgtggaaatgaaccccagt
gatgcaggctttcaggacaggtatgttgtccaggaggtcatcaaagagatggcgaagaat
aggccaatcgatgccaaaggcaagagagcatttaaagtccttgtgttaaatgaagttgac
aaactctcacgagaagcccagcattccctccgtaggactatggagaagtatagcgcatca
tgcagactgatcctgtgctgtaacagctcatcaaaagtcacagaggctgtaagatcccgt
tgcttaaatgtgcgagtgaatgctcctagtgaagatcagattatccaagttctagagttt
attgggaagaaagaaaacctgcagcttccagctggatttgctgctcgtattgctgcacaa
tcaaaccgcaatctgagacgggcaatactgttttttgagacttgcaaagtgcaacaatac
ccatttacatcaaatcaagtcgcacctcctcttgactgggagcaatatgtgtctgaaata
tcaactgatattctgacagaacaaagccctaaaaggctatatgctgtacgccagaaattc
tatgaattacttgtcaattgtatcccacctgaaagtattttgaagaagttactggcggaa
ttacttaagaagttagacgctgatctgaagcacgaaatctgtcactgggctgcacactat
gagcacaagatgcgccttgggtcaaaagccatttttcacctagaagcgttcgtggcaaag
ttcatgagcatttacaaggagttcctggtggcttcatttggttga

DBGET integrated database retrieval system