KEGG   Panicum virgatum (switchgrass): 120691161
Entry
120691161         CDS       T07260                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120691161
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120691161
Spliceosome [BR:pvir03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    120691161
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_EML_2 WD40_WDHD1_1st EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_DCAF4 Beta-prop_Aladin WDR90_beta-prop_4th PRP4 Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_SCAP WD_LRWD1 eIF2A Beta-prop_Nup120_160 WD40_like Tricorn_2nd Beta-prop_ACSF4 Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 120691161
NCBI-ProteinID: XP_039830095
LinkDB
Position
9N:complement(63561672..63565152)
AA seq 524 aa
MENPRPQPPAPTPPMAPLPVPAHPPIAPIPVPPPRAPIPAAASVASTSASAAWGGSGDEV
EYEVSDDHRAARERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREME
RRDRLRALMVRLEADGQVDRLLRAQEDDQAARVGEEEEEEQIQYPFFTEGTQDLLKARVD
IAQYSLPRAKARIERAKRRHEDPDEDPEAEADLVVKQAGEFVLDCSEIGDDRPLTGCSFS
RDASLLATSSWSGLIKVWSMPQITKVATLKGHTERATDVAFSPADDCLATASADKTAKLW
KPDGSLLMSFDGHLDRLARLSFHPSGKYLGTASFDKTWRLWDINTGKELLLQEGHSRSVY
GVGFHPDGSLVASCGLDAYARVWDLRSGRLFFTLQGHVKPVLGVSFSPNGYLVATGSEDN
FCRIWDLRKKQMLYSIPAHKSLISHVKFEPQEGYYLATSSYDTKAALWSARDYKPIKSLV
GHESKVTSLDISGDGQQIVTVAHDRTIKIWSCRSSTQDNAMELD
NT seq 1575 nt   +upstreamnt  +downstreamnt
atggagaaccccaggccgcagcccccggcacccacccctcccatggctccgctccccgtc
ccggcccacccgcccatcgcccccatccccgtccctccgccccgcgcgcccatccccgcc
gccgcctccgtggcctccacctctgcctccgccgcttggggtgggagcggcgacgaggtc
gagtatgaggtctccgacgaccaccgcgccgcccgggaacgccacgagcgcgcggtgcag
gagcttctccagcggcgccgcgcgtacgccatggccgtgcccaccaacgactccgccgtg
cgggcccgcctccgccgcctcggcgagcccatcacgctcttcggcgagcgcgagatggag
cgccgcgaccgcctgcgcgccctcatggtgcggctcgaggccgatggccaggtcgaccgc
ctcctccgcgcacaggaggacgaccaggccgcgcgcgtcggcgaggaggaagaggaggag
cagatccagtaccccttcttcaccgagggcacgcaggacctgcttaaggcgcgcgtcgac
atcgcacagtactcgctgccccgcgccaaagccaggatcgagagggccaagcgccgccac
gaggatcccgatgaggatccagaggcagaggccgaccttgtcgtgaagcaggctggggag
tttgtgcttgattgtagcgagattggagatgatcgcccgctcactggatgctccttctct
cgggatgcatcactgcttgccacaagttcctggagtggattaatcaaagtatggagcatg
ccacaaataactaaagttgcaaccctgaaaggtcatacagaacgtgcaacagatgttgcc
ttttctccagctgatgactgcctagcaacagcttcagctgataaaactgcaaaactatgg
aaaccagatggatcccttctaatgtcctttgatggtcaccttgatcgtcttgctcgcctt
tcttttcacccatctggaaagtaccttggtactgctagctttgacaagacttggagacta
tgggacatcaataccggaaaggaactgctgcttcaagaggggcacagcagaagtgtttat
ggagttggctttcacccagatggttctttggtggcatcttgcggtcttgatgcgtatgcc
cgagtgtgggatctgagatcgggaaggctgttcttcacccttcaggggcacgtgaaacct
gtcctaggagtcagcttctctcctaatggttatctggtagcaaccggaagtgaagacaat
ttctgtcgaatatgggatttgaggaaaaagcaaatgttatattctataccagctcataaa
agtctaatttcacatgtgaaatttgaaccccaagaaggatattatttagcaacctcttcg
tatgacactaaagcagctctctggtcagctcgggattacaaaccaatcaaaagtttggtg
ggccacgagtcgaaggtgacgagtttggatattagtggagatggacagcagattgtgact
gtggcgcatgatcgtacaataaagatttggtcatgcagaagcagcactcaggataatgcg
atggaattggattga

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