Panicum virgatum (switchgrass): 120691273
Help
Entry
120691273 CDS
T07260
Name
(RefSeq) long chain base biosynthesis protein 1a
KO
K00654
serine palmitoyltransferase [EC:
2.3.1.50
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00600
Sphingolipid metabolism
pvir01100
Metabolic pathways
Module
pvir_M00094
Ceramide biosynthesis
pvir_M00099
Sphingosine biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
120691273
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120691273
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.50 serine C-palmitoyltransferase
120691273
Amino acid related enzymes [BR:
pvir01007
]
Aminotransferase (transaminase)
Class II
120691273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Aminotran_1_2
Cys_Met_Meta_PP
OKR_DC_1
Motif
Other DBs
NCBI-GeneID:
120691273
NCBI-ProteinID:
XP_039830247
LinkDB
All DBs
Position
9N:71368416..71373250
Genome browser
AA seq
485 aa
AA seq
DB search
MDMALPVVNATAAVLARVSAAFNAPFARAVVFGVHIDGHLVVEGLLIAVIVFQLTRKSYK
PPKKPLTEKEIDELCDEWEPELLCPPIKDGARIDTPMLESAAGPHTIVDGKEVVNFASAN
YLGLIGNEKIIDSCVGSLEKYGVGSCGPRGFYGTIDVHLDCEAKIAKFLGTPDSILYSYG
ISTIFSVIPAFCKKGDIIVADEGVHWAVQNGLHLSRSTVVYFKHNDMASLASTLEKLTRG
NKRAEKIRRYIVVESIYQNSGQIAPLDEIVRLKEKYRFRVILEESHSFGVLGKSGRGLAE
HYGVPVEKIDIITAGMGNALATDGGFCTGSVRVVDHQRLSSSGYVFSASLPPYLASAAVS
AVNYLEENPSVLANLRSNIALLHKGLSDTPGLEISSHVLSPIVFLKLKKSTGSPTTDLDL
LETIAERVLKEDSVFIVTSKKSNLDRCKLPIGIRLFVSAGHTESDISTLSSSLKRVSASV
LSDHF
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggacatggcattgccagttgtgaatgccactgcggcggtgctcgctcgtgtctcggct
gcgttcaatgccccttttgcccgtgccgtcgtcttcggggtacatattgatgggcacttg
gtcgtggaagggcttcttattgcagtcatagtgttccagctcaccaggaagagctacaaa
cccccaaagaagccactcactgaaaaggagattgatgagctatgtgatgaatgggagcca
gagctgctatgtcctccgatcaaggacggggccaggattgacactccaatgttggaaagt
gctgccggaccgcatacaatcgttgatggtaaagaagttgtcaactttgcgtcggcaaac
tacctcggtttaattggcaatgagaagattattgattcttgcgttggttcacttgagaaa
tatggtgttgggtcttgtggtccacgtggcttttatggaacaattgatgtccaccttgac
tgtgaggcaaaaatagctaaattcctcggaactccagactccattctgtattcttatggg
atttctacaatatttagtgtgataccagccttttgtaagaaaggagatatcatagtcgcc
gacgagggtgttcactgggcagtgcaaaatggtctccatctatcaagaagtactgtggtg
tacttcaagcacaatgatatggcttcacttgcaagcactttggaaaaacttactcgtgga
aataaacgtgctgaaaagatcagacgctacattgttgtagaatccatttaccagaattct
ggccaaattgcccccttggatgagattgtcaggttgaaggagaaatatcggttccgtgtt
attctggaggagagtcattcttttggggtgcttggcaagtctgggcgtggccttgccgaa
cattatggagttcccgttgaaaaaatcgatatcatcactgctgggatgggaaatgctttg
gccactgatggtggcttctgtacaggaagtgtcagagttgttgatcatcagcgtctaagt
agctctgggtatgttttctctgcctcgctgccaccttatcttgccagtgccgctgtttct
gccgtcaactacctggaggaaaacccgtcagttcttgcaaacctaaggagcaatattgct
cttttgcataaaggactatcggatactccggggcttgaaatttccagccatgttctgtca
cctattgtcttccttaaactgaaaaaatcgacaggttctcctaccaccgacctagatctt
cttgaaactattgctgagagggtcttgaaggaagattcagttttcattgtgacatcgaag
aagtcaaatcttgataggtgtaaacttcccattggaatccgcctgtttgtatcagctggc
cacacagaatcagacatctccacactttcctcatccttgaagagggtttctgcgtcagtt
ctttcagaccacttttga
DBGET
integrated database retrieval system
