Panicum virgatum (switchgrass): 120691279
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Entry
120691279 CDS
T07260
Name
(RefSeq) lariat debranching enzyme-like
KO
K18328
lariat debranching enzyme [EC:3.1.-.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120691279
03009 Ribosome biogenesis [BR:
pvir03009
]
120691279
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120691279
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
90S particles
RNase
120691279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DBR1
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-GeneID:
120691279
NCBI-ProteinID:
XP_039830253
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All DBs
Position
9N:complement(9775759..9779772)
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AA seq
411 aa
AA seq
DB search
MKIAVEGCMHGELDIVYDTLRKLEEAEGIKIDLLLCCGDFQAVRNTDDLRCVNVPLKYRT
MNSFWKYYSGQAVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFSGVVKFGNIRI
GGLSGIHKQHNYHSGHYERPPYNEQTIRSVYHVRHYDVLKLMHLKEPLDIFLSHDWPLGI
TEYGNWQKLIRAKKHFEEEVNSRTLGSKPAAELLNKLKPPYWFSAHLHCWFPAIIQHGEN
GPTTKFLALDKCLPGRNFLQVIDIPSNPGPHEIQYDEEWLAITRRFNSIFPLTRRRFTMR
DEQLDTQDDREWIRNKLNTRGFKPFDFVQTAPSFNPSNPVSNSSITRSCRNLQTESFLQL
LELPYLLDSSNSEGVSFVNEVDRNESSSQPGNTLDDEDIELPDEDEDAIDE
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcgcggtggagggttgcatgcatggggagctggacatcgtctacgacacgctt
cgcaagctcgaggaggccgagggaatcaagattgacctcctcctctgctgtggcgacttc
caggctgttaggaatacagatgatttacggtgtgttaacgtcccactaaagtatcgtacc
atgaactcattttggaagtactactcaggacaagcagttgctccatacccaaccatcttt
atcggtggaaatcatgaagcatctaattatctgtgggaattgtactatggaggatgggca
gcacctaacatatactttttagggttttctggtgttgttaagtttggaaacatccgaatt
ggtggactgtcaggaatacataagcaacacaattatcactcaggacactatgagaggcct
ccatacaatgaacagactatacgatctgtgtaccatgttaggcattacgatgttctcaag
ctcatgcatttgaaggagccactagatatattcttatcacatgattggcctctgggcatt
actgagtatgggaactggcagaagctcattcgcgcgaagaagcactttgaagaagaggtt
aacagtagaacgctaggtagcaaacctgcagctgaattactgaacaaactaaaaccgccc
tactggttttcagcacatttgcattgctggttcccggctatcatccaacatggagagaat
ggacctacaacgaagtttcttgcccttgataagtgccttcctggccggaattttttgcag
gttatagacattccatccaatccaggaccacatgaaatccagtacgatgaagaatggctt
gccataacaagaagattcaatagcattttccccttaactcgaaggcgatttactatgcgg
gatgagcagcttgacactcaagatgaccgagaatggattcggaacaagttgaatactaga
gggtttaagccgtttgactttgtccagactgcaccatctttcaatccttccaatccagtc
tccaattcctccataacaagaagttgcaggaatctacaaactgagtctttcctccagctt
ctggaactcccatatctgctggactcatctaactctgagggggtgtcttttgttaatgag
gtcgatagaaacgagtcaagctctcagccaggaaacacgcttgatgatgaagatatagaa
ctaccggatgaagatgaagatgccatagatgaatag
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