Panicum virgatum (switchgrass): 120691347
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Entry
120691347 CDS
T07260
Name
(RefSeq) coatomer subunit alpha-3-like
KO
K05236
coatomer subunit alpha
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120691347
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120691347
Membrane trafficking [BR:
pvir04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
120691347
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120691347
Exosomal proteins of bladder cancer cells
120691347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
TPR_COPA_B
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Fis1_TPR_C
Zn_ribbon_3
ENTH
Beta-prop_DCAF12
zf-CHCC
Motif
Other DBs
NCBI-GeneID:
120691347
NCBI-ProteinID:
XP_039830321
LinkDB
All DBs
Position
9N:complement(10870589..10875700)
Genome browser
AA seq
1219 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFH
ATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LTQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWVLAAHP
EMNLLAAGHDSGMIVFKLERERPAFCVSGDTVFYVKDRFLRLFEYSTQKEVQVAPIRRPG
SVSLNQSPTSLSYSPTENAVLICSDADGGSYELYIVPKDSAGRSDYLQEAKKGAGGSAVF
VARNRFAVLEKSSNQVLVKNLKNEIVKKSPLPIATDAIYYAGTGNLLCKAEDRVAIFDLQ
QRLVLGELQTPAVKYVAWSTDMESVALLSKHAVVIASKKLVHRCTLHETIRVKSGAWDEN
GVFIYTTLNHMKYCLPNGDSGIIKTLDVPIYITRVVGNNIFCLDRDGKNKLIAVDASEYI
FKLALLRKRYDHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNI
QIAVASAKEIDDKDHWYRLGIEALRQGNVGIVEYAYQRTKNFERLAFLYLITGYLDKVGF
MCKIAGQNNNLMGQFHNALYLGDAKKRVEILENAGQLPLAYVTAVTHGLTEIAERIAAEL
GENVPSLPEGKSHSLLIPPAPLTACGDWPLLRVMRGIFEGGLDATGRAELEEDDEAAGAD
WGDEDLNIIDASEVVANGADGFVDAEENEPNEEDGEEGGWDLEDLELPPETETPKAAGNV
RSAVFVAPTPGIPVSQIWTQRSSLAGEHAASGNFDTAMRLLNRQLGIKNFAPLKPLFLDL
HMGSHTYLRALAAAPVIPVAVEKGWNESASPNVRGPPALVFSFSQLEDRLKAAYKATTEG
RFPEALRQFLSILHTIPVIVVDSRREVDEVKELIEIVREYVLGLKMELKRKELRDDVTRQ
QELAAYFTNCKLQRVHMRLVLASAMALCFKQKNYATAAHFARMLLENSPQEAQAKKARQV
LQACQDKNDSHQLNYDFRNPFVVCGATYVPIYRGQKDVSCPYCGSRFAPSIEGQLCTICE
LATVGADASGLLCSPTQLR
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagttcgagacgaagagcaaccgggtgaagggcctgagcttccacccgcgg
cggccatggatcctggcgagcctccacagtggggtgatccagatgtgggactaccgcatg
ggtacccttctcgaccgcttcgacgagcacgatgggcctgtccgcggcgtccacttccac
gctacccagccgctcttcgtctccggaggtgatgattataagattaaggtctggaattac
aagacacaccgctgtctcttcacacttcacgggcaccttgactacattcgcaccgtgcaa
ttccatcatgagtacccatggatcgtaagtgctagtgatgatcagacaatacggatctgg
aactggcagtcacgcacgtgtgtggctgtgctgactgggcataaccactatgtaatgtgt
gcatctttccatcccaaagaggacctggttgtatcagcatcacttgatcagactgttcgc
gtctgggatattggagctctgaggaagaagactgtgtcacctgcagatgacatcctccgt
ctcacccagatgaacacagatctatttggcggtgttgatgctgtagtgaaatatgtcttg
gaaggccatgaccgtggagtcaattgggcctcgtttcatcccactttgccactcattgtt
tctggggcagatgaccggcaggtgaagctatggagaatgaatgacaccaaggcttgggaa
gttgatactttgaggggccacatgaataatgtgtcttgcgtgatgttccatgcaaagcaa
gacatcattgtgtctaactcagaagacaaaagcattcgcatttgggatgccacaaagaga
actggtattcaaacatttaggcgggaacatgaccgtttctgggttcttgctgctcatcct
gaaatgaatcttcttgctgctggtcatgacagtggcatgatcgtgttcaaactagagagg
gaacgcccagccttctgtgtaagtggtgacactgttttctatgtgaaggaccgatttctc
cgattatttgaatactctacccagaaagaagttcaagtggctcccataagaaggcctgga
tcagttagcttgaaccagtcaccaacgtcgttatcatatagcccaaccgaaaatgctgtc
ttgatctgttctgatgctgatggaggctcatatgaactctacattgttcctaaggattca
gctggcaggtctgattatttgcaagaggcaaagaagggagctggtggttctgcagttttt
gtggcgcgcaacaggttcgcagtccttgagaagagtagcaatcaagttttggtgaagaat
ctgaagaatgaaattgtgaagaaaagtccccttccaattgcgactgatgcaatatactat
gctgggaccggtaacttgctgtgcaaagctgaagatcgtgtggccatctttgatcttcag
caaagactggttcttggtgagctccagactcctgctgttaaatacgttgcttggtccacc
gatatggaatctgtagcactgttgagcaagcatgcagtggttatagctagcaagaagctt
gtccatcgttgcacattgcatgaaaccatccgtgtgaaaagtggtgcctgggatgagaat
ggcgtgttcatttacactacattgaaccatatgaagtactgtcttcccaatggagatagt
gggatcataaaaacccttgatgttcctatttacataacaagggttgttgggaacaatatt
ttctgcctagatcgtgatgggaagaacaagttgattgcagttgatgcatctgagtacatt
ttcaagctcgcacttctccgaaaacgctatgatcatgttatgagtatgattaagaactcc
cagctatgtggacaggctgttatttcttatttacagcagaaaggttttccagaagttgct
ctgcactttgtgaaggatgagaagaccagatttaacctagctcttgagagtggtaacatt
caaattgcagttgcttctgcaaaggagattgatgacaaggatcactggtacaggttggga
attgaggccctgaggcaaggaaatgttggcattgtggaatatgcataccaacgaacaaag
aattttgagaggcttgcttttctgtatcttattactggctatttggacaaggtgggcttt
atgtgcaaaattgctggacagaataataatttgatgggacagttccacaatgcgctatat
cttggggatgctaagaagagagttgagatcttggagaatgctgggcagctaccgcttgct
tatgttactgctgttactcacgggctcactgaaattgctgagaggatcgctgctgaactg
ggtgaaaatgttccttcactgcctgaaggaaaatctcactcactgctgattccccctgca
cctcttacagcctgtggtgattggccattgctgcgtgtgatgcgtggaatttttgaaggt
ggactggatgcaactggaagggcagaacttgaggaagatgatgaagctgctggtgctgac
tggggtgatgaagatttgaatattattgatgcaagtgaggtggtggcaaatggcgctgat
ggttttgttgatgcggaggagaatgaaccaaatgaggaggatggtgaggaaggtggctgg
gacctggaagatctggaacttccacctgaaacagagactccaaaagctgctggcaatgtt
cgctctgctgtatttgttgctcctacaccaggcatccctgtcagccagatttggactcag
agatcgtctctggctggggagcatgcagcttcagggaactttgacacagcaatgcggtta
cttaaccgccaattgggtatcaagaatttcgctcccctgaagcccttgtttcttgatctg
cacatgggcagtcacacatatctgcgtgcacttgctgctgctccggtaataccagttgct
gttgagaaaggatggaatgagtctgctagtcctaatgtgaggggccctcctgcacttgtt
ttcagcttctcacagttggaagacagactcaaggctgcctacaaagccacaacagagggc
aggttcccagaagcactgaggcagttcctaagcatcttacataccattcctgttattgtg
gtggactcacggagagaagttgatgaagtgaaggaattaattgagatagtgagagagtac
gttcttggtctgaaaatggaactcaagagaaaggaattgagggatgatgttacccgtcag
caggagttggctgcttacttcactaattgcaagcttcaaagagttcatatgaggcttgtg
cttgcaagcgctatggctctttgtttcaagcagaaaaactatgctactgcagcacacttt
gcaaggatgcttctcgagaacagcccccaggaggctcaagcaaagaaggctcggcaggtg
ctgcaagcttgccaggacaagaatgattctcaccaactgaactatgactttagaaatcct
ttcgttgtctgcggtgctacatatgttcctatctaccgtggccaaaaagatgtttcctgc
ccatattgtggatcccggtttgcaccttccatcgaggggcagctttgtaccatatgtgag
cttgccacagttggggcagatgcatcaggcctcctctgctcccctacacagttgagataa
DBGET
integrated database retrieval system
