Panicum virgatum (switchgrass): 120691387
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Entry
120691387 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase RNF170-like
KO
K15707
E3 ubiquitin-protein ligase RNF170 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120691387
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120691387
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120691387
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1232
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_4
zf-RING_5
zf-C3HC4_2
zf-RING_2
DUF6274
Motif
Other DBs
NCBI-GeneID:
120691387
NCBI-ProteinID:
XP_039830376
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All DBs
Position
9N:1395264..1398109
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AA seq
191 aa
AA seq
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MSSSSSASAVPPEDDVCSVCHDRFRIPCQANCSHWFCGECIIRVWHHGPAVQACKCPICR
RLINLLVPAPLSEQEDDPQLHRILGEIQHYNCIFGGAPRSLTQRLQDLPFFIRRLFRELM
DPQRTLPLVFRARMMMMVALSAIYVLSPVDILPESVLGLFGFVDDLLILLIVFLHLAAVY
RSLLLYRHGGQ
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgagctcctcctcgtcggcgtcggccgtgccgccggaggacgacgtctgctccgtctgc
cacgaccgcttccggatcccgtgccaggcaaactgctcccactggttctgtggagagtgc
atcatccgtgtttggcatcatgggcctgcagtacaggcttgcaagtgtcccatttgtcgc
cgccttatcaatctactggtaccggcacctttatcagagcaggaggatgatccacaactt
caccgtattttaggagagattcagcactataactgtatatttggtggagcaccacgcagc
ctgactcagaggttgcaagacctacccttcttcatccgaagactgttcagagaactaatg
gatccccagaggactctcccacttgtgttcagggcgcggatgatgatgatggttgcattg
agcgcaatttacgtgctgagccctgttgacattctcccggaaagtgtgctggggctcttt
ggattcgttgatgacctgctgattctgttgatcgtgttcctccacctcgccgccgtctac
cggtcattgctcctgtaccgccatggggggcaatag
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