Panicum virgatum (switchgrass): 120691452
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Entry
120691452 CDS
T07260
Name
(RefSeq) nijmegen breakage syndrome 1 protein-like isoform X1
KO
K10867
nibrin
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120691452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120691452
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120691452
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
120691452
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
120691452
BRCA1-C complex
120691452
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FHA
BRCT
Yop-YscD_cpl
Nbs1_C
Motif
Other DBs
NCBI-GeneID:
120691452
NCBI-ProteinID:
XP_039830457
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Position
9N:complement(22481775..22486083)
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AA seq
629 aa
AA seq
DB search
MVWALTPVDTVRGTQKYYIFAAGTYKVGRKDCDVVVQADTSISRVHAEIAIEKMVAWDPH
SGAPASPSYVRVVDRSKYGTFVNKVHGTQGSRLHKDEDVMLTDGDTVTFGTGNATFRLSF
VPIVAFFHGRKSARIDPSLHAVMTSIGAYATRKWSDECTHVLADESCSLTPELLDAVMGK
KQIVLGEWFKAMAEKNIHIEIPSCTQYIPNLTLDGTVIKMVEINLIQNCLAGYTFILGPS
DKYQFGEKLHGLLEATGAKYLHIDEFCANSQDSVAGDTDQQILVVPARYPLEFSKICGLF
PLSKISDVKLFAAILSGRLEATAIEPPAFIVTSSNSTDETIVADSDVEMETATSNPSGAA
YKSQNRIENISADEKENTNITNEVAVTVSRTKANVIQPNDTSKAEASKPTEDDVKVIDKT
AVYRSKARDEDVRVISKVLKDENLDISRDGACDIIFSQDLVVKRPHRSAPAASTEECVHV
YFWASDLLLQRETVSGNSFKDLVPFARDPYRESDYDGSTMTDFMREEKQRKQMEAIAEDL
FNNAKMRACRRRLPVYVYVLRLTFRSEVGGLDNCKRNCSFPKQMTVILLHLRFSSSVEGF
WKCEKPAPGLLFYHCGRDQLSAVSIGRLC
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggtctgggcgctgacccccgtcgacacagtgcgcgggacgcagaagtattacatcttc
gccgccgggacgtacaaggtcggccgcaaagattgtgatgtcgttgttcaagctgacaca
tctatatcccgagtccatgcggagattgcaattgaaaagatggttgcctgggatccgcat
tctggcgcacctgccagtccatcctatgttcgtgtagtcgaccgatcgaagtatggcaca
tttgtcaacaaagtacatggaacccagggcagtcgtctacataaagatgaagatgtaatg
cttactgatggggatactgtgacttttggaactgggaatgcaaccttcaggttgtcattt
gtccccatagtggccttttttcatggcagaaagtcggcgcgaattgatccatcgttgcat
gcagtcatgacatctattggtgcatacgctactcgtaagtggagtgatgaatgtacacat
gttcttgctgatgaatcatgttcattgacaccagagctcctcgatgcagttatgggaaag
aagcagattgtattgggagagtggtttaaggcaatggctgaaaagaacatacacatagaa
atcccttcttgtacacaatacattccaaatttgactcttgatgggacagtaatcaagatg
gtggagatcaacctcattcagaattgtctagcaggctatacttttatcctagggccatca
gataagtatcaatttggtgagaaactccatggattactggaagcaactggagcaaaatat
ctccacattgacgaattttgtgcgaacagccaggactcagtagctggagatactgatcaa
caaattcttgtggttcctgcaagatatcctttagagtttagtaagatatgtgggctattt
ccgttgtcgaagatcagtgatgttaagctatttgctgctatattgtctggccgcttggaa
gcaactgctattgaaccacctgctttcattgttacatcatcgaattcgacggatgaaact
attgtggcggattctgatgttgaaatggagaccgcaacttctaatcctagtggtgctgcc
tacaagtctcaaaatcgcattgagaacatctctgctgatgaaaaggaaaacacaaatata
accaatgaagttgctgtaactgtcagtagaacaaaagctaatgttattcaaccaaatgac
acttcgaaagctgaagcttcgaaacctacggaggatgatgttaaggtcatagacaaaaca
gcagtatatagatccaaagctagagatgaggatgttcgtgttataagcaaggtgcttaag
gatgagaatttggacatcagcagggatggggcttgtgatataatatttagtcaggatctg
gttgtcaaaagaccccatcggtcagctcctgctgcatcaactgaagaatgtgtccatgtt
tacttctgggcctctgaccttttacttcagagggaaacagtgtcgggaaacagcttcaag
gaccttgttccatttgcacgagatccatacagagaatctgactatgatgggagcacaatg
actgatttcatgcgtgaggagaaacagcggaaacaaatggaagccattgcagaggacctc
ttcaacaatgcaaagatgagagcctgcaggagaagattaccagtatatgtatatgtgctc
cgcctgacttttcgttcagaggtgggaggcctagataactgcaagcgcaattgctcattt
cctaagcagatgacagttatcctgttgcaccttcggttctccagttccgttgaaggtttc
tggaagtgtgagaagcccgctccaggactccttttttaccactgcgggagagaccagctt
agtgctgtaagcataggaaggttgtgttag
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