Panicum virgatum (switchgrass): 120691453
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Entry
120691453 CDS
T07260
Name
(RefSeq) cell division control protein 48 homolog D-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120691453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120691453
03009 Ribosome biogenesis [BR:
pvir03009
]
120691453
04131 Membrane trafficking [BR:
pvir04131
]
120691453
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120691453
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
120691453
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
120691453
Membrane trafficking [BR:
pvir04131
]
SNARE
SNARE associated proteins
Others
120691453
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120691453
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120691453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_33
AAA_2
AAA_5
AAA_22
AAA_14
NPHP3_N
TIP49
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
AAA_17
ATPase_2
Parvo_NS1
AAA_18
AAA_lid_PRS2_C
IstB_IS21
ABC_tran
Vps4_C
Viral_helicase1
AAA_7
NACHT
NB-ARC
DUF815
TsaE
ResIII
AAA_24
Zeta_toxin
SLFN-g3_helicase
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
120691453
NCBI-ProteinID:
XP_039830462
LinkDB
All DBs
Position
9N:78818894..78823367
Genome browser
AA seq
806 aa
AA seq
DB search
MASQGASSSDPKDKKDYSTAILERKKSPNRLVVDEATSDDNSVVALHPDTMERLQLFRGD
TVLLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVH
ILPFDDTIEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCI
VAPDTEIFCEGEPIKRDDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEHIAKDTHGYVGADLAALCT
EAALQCIREKMDIIDLEDETIDAEILNSMAVSNDHFKTALGTSNPSALRETVVEVPNVSW
DDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDDQSRLQI
FKACLRKSPVANDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEMDIERERRRKDN
PEAMEEDEVDEIAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAD
QPAAAAGPAGAADPFASAADDDDLYS
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccaaggcgcgtcttcctccgatccgaaggataagaaggactattctacggcg
atcctcgagaggaagaagtcgccgaaccgactggtggtcgacgaggccaccagtgatgac
aactccgtcgtcgcactgcacccggacaccatggagcgcctccagctcttccgcggcgac
actgtcctgctcaagggtaagaagaggaaggacactatctgcatcgtgcttgcagatgac
acttgcgaggagccaaaaatcaggatgaacaaggttgtcaggaagaacttgagggtacga
cttggtgatgtggtttctgtccatcaatgcccagatgtcaagtatgggaagcgtgtacac
atacttccatttgatgacacgattgaaggcattactggcaacttatttgatgccttcctg
aaaccatacttccttgaagcctatcgtcctttgagaaaaggagaccttttccttgtcagg
ggtggtatgagaagtgtagaattcaaagttatagagactgaccctgcagagtattgtatt
gttgcaccagatacagagatattctgtgaaggtgagcctattaagagggatgatgaggaa
agactcgatgaggttggctatgatgatgttggaggagttaggaagcaaatggcccaaatc
agagaactggttgaacttccactgcgtcatccccagcttttcaagtccattggtgtgaag
ccaccaaagggcatattgctgtatgggcctcctggttctggcaagacccttattgctaga
gctgtagcaaatgagacaggtgctttcttctttctgatcaatggaccggaaatcatgtct
aagctagcaggagaaagcgagagcaatctcagaaaggcttttgaagaagctgagaagaat
gcaccttccatcattttcattgatgagttagattccatagcacctaagagagagaagacc
catggagaagttgagaggcgtattgtttcacaacttttgactctcatggacggcctcaag
tctcgcgcgcatgtcattgttatgggggccacaaaccgtccgaacagtatcgatcctgct
cttagaaggtttggtaggtttgaccgtgagattgatattggtgttccggatgaagttggg
cgccttgaggttcttcggattcacaccaaaaacatgaagcttgctgaagatgttgacctg
gagcacattgccaaggatacccatggttacgttggtgctgatcttgctgccctttgtact
gaggctgctcttcagtgcattcgtgagaagatggatattatagatcttgaggatgaaaca
atagatgccgagatactcaactctatggctgtctcaaatgatcatttcaagactgcactt
gggacaagcaacccgtctgctctgcgtgaaactgttgttgaagttccaaatgtctcttgg
gatgatattggtggcctggagaacgtcaagagggagcttcaggagactgttcaatatcca
gtggagcatccagagaaattcgagaagtttggaatgtctccttcaaagggtgttctattt
tacggccctcctggctgtggaaagactctgttggccaaggcaattgctaatgaatgccag
gctaacttcatcagtgtgaagggacctgagctgcttaccatgtggtttggtgagagtgag
gccaatgtccgtgagatttttgacaaggctaggcagtccgccccatgtgttctcttcttt
gatgagcttgactccattgctactcagaggggaagcagcgttggtgatgctggaggtgct
gctgacagagtgttgaaccagctgttgactgagatggatggcatgaatgccaagaagact
gttttcatcattggtgccaccaacaggccagacatcattgaccctgctttgctcaggcca
gggcgtcttgatcagcttatctacatccccctgcccgatgaccaatcaaggctccagatc
ttcaaagcctgcctcaggaagtcgcctgtggctaatgatgttgacttgaacgctcttgcc
aagtacacccaaggattcagcggtgcagatatcactgagatctgccagcgtgcgtgcaag
tatgccatcagggagaacattgagatggacatcgagagggagaggcgtaggaaggacaac
cctgaggccatggaggaagacgaggtggacgaaattgctgagatcaaggctgttcacttc
gaggagtcgatgaagtatgcgcgccggagcgtgagcgacgctgacatccgcaagtaccaa
gccttcgcccagacgctccagcagtctcgcgggttcggcaccgagttccggttcgctgac
caaccggcggcagcggcaggccctgctggtgcggccgaccccttcgcatccgcggcggac
gatgatgacttatacagttaa
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