KEGG   Panicum virgatum (switchgrass): 120691454
Entry
120691454         CDS       T07260                                 
Name
(RefSeq) ras-related protein RABF1-like
  KO
K07887  Ras-related protein Rab-5A
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04144  Endocytosis
pvir04145  Phagosome
pvir04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    120691454
   04145 Phagosome
    120691454
   04148 Efferocytosis
    120691454
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120691454
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120691454
   04031 GTP-binding proteins [BR:pvir04031]
    120691454
Membrane trafficking [BR:pvir04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    120691454
 Endosome - Lysosome transport
    120691454
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120691454
  Exosomal proteins of other body fluids (saliva and urine)
   120691454
  Exosomal proteins of colorectal cancer cells
   120691454
  Exosomal proteins of bladder cancer cells
   120691454
GTP-binding proteins [BR:pvir04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    120691454
SSDB
Motif
Pfam: Ras Roc Arf RsgA_GTPase Gtr1_RagA GTP_EFTU ATPase MMR_HSR1 AAA_7 MMR_HSR1_Xtn TniB AAA_29 AAA_16
Other DBs
NCBI-GeneID: 120691454
NCBI-ProteinID: XP_039830463
LinkDB
Position
9N:78811270..78814730
AA seq 200 aa
MGCSPSVPARSTGGLNTVNNDTSSATDSKDLRAKLVLLGDSGVGKSCIVLRFVRGQFDPT
SKVTVGASFLSQTLALEDSTIVKFEIWDTAGQERYAALAPLYYRGAAAAIVVYDITSPES
FNKAQYWVKELQKHGSPGIVMVLVGNKADLHENRSVSSQDAQEYAEKNNMFFIETSAKTA
DNINQLFEEIAKRLPRPTMS
NT seq 603 nt   +upstreamnt  +downstreamnt
atgggttgctcgccctccgtgccagctagaagtacaggagggctgaacactgtcaacaac
gatacctcttctgccactgattcaaaggacttgcgtgctaagttggtattactgggagac
tcaggtgttgggaaaagctgcatcgttcttcgctttgttcgtggtcagtttgatcctact
tccaaggtaactgttggtgcatcttttttatcacaaacattggcattggaagactcaaca
atagtgaaatttgaaatttgggatactgctggccaagagaggtatgctgccttggcacca
ctttactacagaggagctgctgctgcaattgttgtttatgatataactagtccggaatca
tttaacaaagcacagtactgggtaaaggaacttcagaagcatggtagtcctggtattgta
atggttttggttggcaataaggctgacctgcatgagaatcgaagtgtatcttcacaggat
gcacaggagtacgcagagaagaacaatatgttttttatcgagacgtcagcaaagacagca
gataatataaaccaactatttgaggaaattgcaaagaggttgcctaggccaacgatgtcc
tga

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