Panicum virgatum (switchgrass): 120691517
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Entry
120691517 CDS
T07260
Name
(RefSeq) plant-specific TFIIB-related protein 1-like
KO
K03124
transcription initiation factor TFIIB
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120691517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120691517
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
120691517
Prokaryotic type
Archaeal type
TFB
120691517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Cyclin_C
TRAFD1-XIAF1_ZnF
HTH_Mga
Motif
Other DBs
NCBI-GeneID:
120691517
NCBI-ProteinID:
XP_039830525
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All DBs
Position
9N:75625528..75628365
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AA seq
536 aa
AA seq
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MSQAAQCPYCRASGPARCATTQPPLSRAVSECSACARIVLERHLHTHPFFPLLPSLHPLP
LVTPDLATAVEPTPAPSPSPGGEGDEDPFLPAGFVSAFSAFSLERHPVLARSASAFSGLL
AELERALAVDSAAASSNPDPAGPMVSVDSLRAYLQIVDVASILRLDRDIADHAFDLFKDC
SSATCLRNRSVEALATAALVQAIREAQQPRTLQEISTASNLPQKEIGKYIKILGESLKLS
QPLNSNSIAVHMPRFCSLLQLNKSAQELAAHIGEVVVNKCFCTRRNPISISAAAIYLACQ
LEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPPDYTPATPPEKAFPMTTIYSVR
PSSGKDLYQDKIFDSSRQKGPEPAEPDHMVIVKEEEEKKISALGRPPAKLEPHELSKAFW
PSNAPLSTSPKSDRDKTETNVRGFNLNEVSCAMDSDRADTTVKPSFGDQSLNESNMLPSP
NRQPLPWQLKQGATAAGPSYSRLREQHIGLDLVAALKGIGKRSAGDGGDGRDKEGK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaggcggcgcagtgcccctactgccgcgcgtcggggccggcgcggtgcgcgacg
acgcagccgccgctctcgcgcgccgtctccgagtgctccgcctgcgcccgcatcgtcctc
gagcgccacctccacacgcaccccttcttccccctcctcccctccctccacccgctcccc
ctcgtcacccccgacctcgccaccgccgtcgagcccacccccgccccctccccctccccc
ggcggcgaaggtgacgaggatcccttcctccccgcgggcttcgtctccgccttctcggcc
ttctccctcgagcgccaccccgtcctcgcccgctccgcctccgccttctccggcctcctc
gccgagctcgagcgcgcgctcgccgtcgactccgccgccgcgtcctccaacccggacccc
gctggtcccatggtctccgtcgacagcctccgcgcctacctccagatcgtcgacgtcgcc
tccatactcaggctcgaccgggacatagccgaccacgccttcgatctcttcaaggattgt
tcctccgcgacctgcctcaggaaccggagcgtcgaggcgctcgcgaccgcggcgctcgtg
caggccatccgcgaggcgcagcagccccggacgctgcaggaaatctctactgctagcaat
cttcctcagaaagagataggaaaatacatcaaaatactcggcgaatctctgaaactgagc
caacctcttaacagcaactcaattgctgttcatatgcctcgattttgcagcttgctccag
ctgaataagtctgctcaggaacttgcagctcatatcggtgaggtggttgttaataaatgc
ttctgcacaaggcgcaatccaataagtatatctgctgctgcaatatatcttgcatgtcaa
ctggaagacaagcgcaaaacccaggctgaaatctgtaaagtaacaggccttacagaggtc
actctacgcaaagtgtacaaagaactcctggagaactgggatgatttgctcccccctgac
tatacaccggccacaccaccagagaaagcttttccaatgacaaccatttactcagtgcgc
ccgtcaagtggcaaggatctgtatcaggataagatatttgatagtagtaggcagaaaggt
cctgagcctgcagagcccgatcacatggtcattgtgaaagaagaggaagaaaagaaaatc
agtgctcttggtcgaccgcctgcaaaacttgagcctcatgagctgagcaaggcattctgg
ccatcaaatgccccattatcaacatctccaaaatctgatcgtgacaagacagaaactaat
gtccgtgggttcaaccttaatgaggtatcatgtgcaatggattctgatagagcagatact
acagtgaagccaagtttcggcgatcagtcattgaatgaatcaaatatgcttccatctccg
aataggcagcctttaccatggcagcttaagcaaggggcgactgcagctggtccatcatat
tctaggcttcgtgagcagcacattggccttgaccttgtagctgctctgaaggggattgga
aaaaggagtgctggggatggtggtgatggccgggataaggaagggaagtga
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