Panicum virgatum (switchgrass): 120691662
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Entry
120691662 CDS
T07260
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120691662
03015 mRNA surveillance pathway
120691662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120691662
03041 Spliceosome [BR:
pvir03041
]
120691662
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120691662
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
120691662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
120691662
NCBI-ProteinID:
XP_039830737
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Position
9N:69917990..69928330
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AA seq
843 aa
AA seq
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MSGGFFRGTSADQDTRFSNKQAKLLKTQKFAPELDHLVDMSKVKMDVMKPWIAKRVTELL
GFEDEVLINFIYGLLEEKAADGKKIQIQLTGFMEKNTVKFMKELWSLLLSAQQNASGVPQ
QFLDAKEAEIQQRKAEDDRIAQEIQKKREKEGRDLELEKQKRMDGDAGNSRSSGDLTGSA
INNTTVNVEEDMELDFKRSSRTKNRASRRSRSISLSPRGRRRSISPRKHSRSPSRRSRSI
DRQRASSRRSISPRRSASPRRHSPRRRSPYSRRGSPSLPRYPSPSSRRRSPLRRKSPSSG
SRRSPSPRHRRSPARAPRRSPSPAHRRSPIRRRFSPGRHRSPSPARRRPRSPSPGRRRPR
SPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSPSPGSHRLRSPSPGRRRPWSQSPVKRRSP
SPKRRRRSPSPRTRCANRRPSPQRRRSISPYSSKSPNRSRRSLSIEADKGTNGTPSIKDT
VLPERDQERRSDDNDRDGARIGDDHSPDSEHRLLKSLRSPNNEERNSTRDRSSGKQLPSQ
DSTDTSGDEEEGSRARENARKANSARRKTKDSADRQLSKVGAGASSPGEKSPFMLQSGKG
VQKKHLDQLSESSEDELVGRRMKHRTDPPDERSPPRIEKDDLHSKDGRKSERAMMGSRDE
SDDAIEAKKFISEINGNSQSEDGSPVKKPKKRTDTKSHIDSGSSGSEEPDKHRSHSEKRR
HKKANRHKRQYDDSSESDTEPDGKEAKRRRKEEKRLRKEERRRRREERHRRRAERHASKQ
KMKQTDTVALPSDSDKDRDSGSDVDVRKRGSPAGREESDQKKLEIELREKALESLRAKKA
INN
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcttcttccgggggacgtccgctgaccaggacacgcgcttctccaacaag
caggcgaagctgctcaagacacagaagttcgcgcctgagcttgaccacttggtggacatg
tctaaggtcaagatggatgtgatgaagccctggatcgccaagcgggtcactgagctcctc
gggttcgaggatgaagtgctcatcaacttcatctatggcctcctcgaagagaaggcggca
gatgggaagaagattcagatccagctaacaggattcatggagaagaacacagtaaagttc
atgaaggagctctggagcctcctcctaagtgcgcaacagaatgccagtggggtacctcaa
cagtttctagatgcaaaggaggctgaaatacagcagagaaaggcagaggatgatagaatt
gcacaggagatccaaaaaaagcgggagaaagagggaagagacttagaactggagaagcag
aaaaggatggatggggatgctggcaactcaagatcctctggtgatctaactggctctgct
ataaataatacaactgtcaatgttgaggaagacatggaattggacttcaagcgcagctca
agaacaaagaaccgggcaagtcgcagatccaggagcatatctttgtcgcctcgtggtagg
cgaagatctatttctcccagaaagcattctcgatctccttccaggcgttcccgctcaatt
gatagacagcgtgcgtcatcacggcgttcgatttcacctagacgctctgcttctccccga
aggcattctccaagaaggagatcaccttattcaaggagaggttcaccttcattgccaagg
tatccatccccatcttcacgccggagatctcctcttcgcagaaaatcaccatcgtctggg
tcacgaaggtcaccttctcctcgccatcgtcgttcgccagctcgtgctccaaggaggtca
ccatctcctgcacatcgaaggtctcctatccgacgcaggttttcaccaggtagacatcga
tctccatctccagcaaggcgtaggccaagatccccatctccgggaaggcgcaggccacgt
tccccatctccaggaaggcgcaggccacggtcgccgtctccaggaaggcgcagaccacgg
tcgccttctccaggaaggcgcaggccacggtccccatctcctggaagccacaggctacgc
tccccatctcctggaagacgtaggccatggtctcaatctccagtaaaacgtcggtcccca
tctccaaaacgtcggaggagatccccatcaccaagaactcgttgtgcaaatcggcgtcca
tctccacagcggagaaggagtatcagtccgtacagtagcaaaagtcctaatcgttctcgc
cggagtttgagtatagaggctgataaaggaacaaatggcaccccctccattaaggacaca
gttttgcctgaaagggaccaagaacgaagatcagatgataatgacagggatggtgcaagg
attggcgatgatcattccccagattctgaacataggttgttaaaatcattgaggtcgccc
aacaatgaagaaagaaactccacacgtgataggagctcagggaaacaattacctagtcag
gacagcacagatacaagtggagatgaggaggaaggcagtcgtgctagagagaatgcacgg
aaagcaaattcagcgcgtaggaaaacaaaggattcagcagatcggcaactgagcaaagtt
ggagctggtgcctctagccctggggaaaaatcaccattcatgttacagagtggcaagggt
gtccagaagaaacaccttgatcaactgtcagaatcatcagaagatgagcttgttggtaga
agaatgaagcacagaactgatcctcctgatgagcgttccccgcctagaattgaaaaggat
gacttgcactcaaaggacgggaggaaaagtgagcgtgccatgatgggttcacgtgatgaa
tctgatgatgctatcgaggcaaagaaatttatttctgaaatcaatgggaactcccaatca
gaagatggaagtcctgtcaaaaagcccaagaaaagaacagatactaaaagccacattgat
tctggtagttcagggtctgaagaacctgacaaacatagatcccattctgagaagcgaagg
cacaagaaggccaacaggcataagaggcaatatgacgatagttctgagtctgataccgag
ccagatggcaaagaggcaaagaggaggaggaaggaagaaaagagactgagaaaagaagaa
agacgtcgaagacgtgaagagcggcatcgcagaagggcagaacgccatgccagcaaacaa
aaaatgaagcagactgatactgttgcactgccttcagattctgacaaggatcgggattct
ggttcagatgttgatgttaggaaaagaggttcacctgctggcagagaagagtctgatcag
aagaaacttgaaattgagcttcgtgagaaggcccttgagtctcttagagcaaagaaagcc
atcaacaactag
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