Panicum virgatum (switchgrass): 120691730
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Entry
120691730 CDS
T07260
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120691730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120691730
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120691730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
Motif
Other DBs
NCBI-GeneID:
120691730
NCBI-ProteinID:
XP_039830836
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All DBs
Position
9N:complement(48182473..48203106)
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AA seq
942 aa
AA seq
DB search
MDGDDFTPEGGKLPELKLDARQAQGFISFFRKLPQDPRAIRLFDRRDYYTAHGENATFIA
RTYYHTMSALRQLSSSTEGISSASVSKAMFETIARNILLERTDRTLELYEGSGSSWRLTK
SGTPGNIGSFEDILFANNDMQDSPVIVALFPVFRETQLYVGLSFLDMTNRKLGLAEFPED
SQFTNVESALVALGCKECLLPVDCEKSLDLNPLQNAIRNCNVLLTEKKKADFKSRDLAQD
LGRIIRGSVEPVRDLLSQFDYALGALGALLSYAELLADDTNYGNYIIEKYNLNCYMRLDS
AAVRALNIAEGKTDVNKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQ
AIVEDPELRQGLRQQLKRISDIDRLTHSLRKKSANLQPVVKLYQSCSRISYIKGILQQYN
GQFSTLIRTKFLEPLEEWMTENRFGRFASLVETAIDLDQLDNGEYRISPLYSSDLAVLKD
ELSVVEDHINNLHMHTANDLDLSVDKHLKLEKGPFGHVFRISKKEEQKVRKKLTSNYIII
ETRKDGVKFTSPKLKKLGDQYQALLSEYTSCQKKVADNVVRVSGTFSEVFENFAAVLSEL
DVLQSFADLATSCPVPYVRPDITASDEGDIILQGSRHPCLEAQDGVNFIPNDCTLVRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDQASVSVRDCIFARVGAGDCQLRGV
STFMQEMLETASILKGATNKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFAT
HFHELTALAHRNDDEDRHVSDIGISNYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVVALAKSKAAELEDFSTTPVFSDDSKEEVGSKRKRVFSPDDVTRGAARARLF
LEEMAALPIGEMDGSQTMEIATKLKADLQKDAADNPWLQQFL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggacggagacgacttcacgccggagggcggcaagcttccggaattgaagctagatgcg
aggcaagcgcagggtttcatctccttcttcaggaaactgccgcaggacccccgggccatt
cgtctcttcgatcgcagggattattacactgctcatggtgagaatgccacgtttattgca
aggacatactaccacacaatgtcagccttgcgccaactaagtagcagcactgagggaatc
tcaagtgccagtgtgagcaaggctatgtttgagaccattgcccgcaacattttgttggag
cggactgaccgtacattggagctctatgagggaagtgggtcaagttggaggttaacaaag
tctggaacacctggaaatattggtagttttgaagacattctgtttgcaaataatgacatg
caagattcaccagtcattgttgctttgtttccagtgttccgggaaactcagctgtatgta
gggctaagttttttggatatgaccaacaggaagcttgggttagctgagttccctgaagat
agccaattcacaaatgttgaatcagcacttgttgcattaggttgcaaggagtgtcttctc
ccagtagattgtgagaaatcccttgatttgaatccccttcaaaatgccattcggaattgt
aatgttctattgactgaaaaaaagaaggctgacttcaaatccagagatcttgcgcaagat
cttggtagaataatcaggggttctgttgagccagttcgtgacctgctatctcagtttgac
tatgctcttggtgcccttggagctctgttatcttatgccgagttgctagcagatgatact
aactatggaaattacataattgagaagtacaatttgaattgctacatgagacttgattct
gctgctgtgcgagcattaaatattgcagaagggaaaactgatgtgaacaagaacttcagt
ttgtttggtttgatgaacagaacctgtactgttgggatgggaaagagattgctgaataga
tggctgaaacaacctctattagatgtaaatgaaatcaataacagattagatatggttcag
gctattgtagaagacccagagcttcgtcagggactcaggcaacaacttaaaaggatatca
gatattgatcgtctaacgcattcactccgcaagaaatcagctaatctacagcctgttgtt
aagctttaccagtcttgttccagaatctcatacatcaagggtattcttcagcaatacaat
ggacaattttccacattgataaggacaaagtttcttgagccattggaagaatggatgaca
gagaatcgatttggtaggtttgcttctcttgttgagacagctattgaccttgatcagctg
gacaatggagagtacagaatatctcccctatattcttctgacttagctgtgctgaaggat
gagctttctgttgttgaagatcacataaataatttgcacatgcatacagctaatgatctg
gatctttctgttgataagcatctgaagctagaaaaaggaccgtttggacatgtgtttaga
atctcgaagaaagaggagcagaaagtcaggaagaaactcactagcaactacataatcata
gaaactcgtaaagatggtgtgaagttcactagtccgaagctgaaaaagctaggtgatcaa
taccaggcactgcttagtgagtacacaagttgtcagaaaaaggttgctgataatgtagtg
agggtttcgggcaccttctcagaggtatttgaaaattttgctgcggttctttcagagttg
gatgttttacaaagttttgctgatttggcaactagttgcccagttccttatgtaaggcca
gacattacagcatcggatgaaggagatattattctacaaggtagcagacatccttgtctg
gaagcacaagatggtgttaactttatacccaatgattgcactctggtaagagggaaaagt
tggtttcagatcattactggaccaaacatgggaggaaaatccacgttcataagacaggtt
ggtgtaaacgttttgatggcacaagttggttcctttgttccttgcgatcaagcaagtgtt
agtgtgagagattgtatttttgctcgtgttggtgctggtgattgccaacttcgtggtgta
tcaacctttatgcaagaaatgcttgaaacagcatccatcctgaaaggcgccactaataag
tctcttataattatcgatgagctgggacgtggaacttccacatatgatggatttggtctc
gcttgggctatctgtgagcatctagtggaagtgactcgagcacctaccttgtttgcaacc
catttccatgaattaactgcattagcacatagaaatgatgatgaggaccgacatgtttct
gatatcggaatttcaaattatcatgtgggtgctcacatagatccatcaagtcggaagtta
actatgctttacaaggttgaacctggggcatgcgaccaaagttttggtattcatgttgca
gaatttgctaattttccagaagctgttgttgctcttgcaaaaagcaaagcagcagagtta
gaagacttttctactacacccgtgttttctgacgactcaaaagaagaggttgggtcaaag
cgcaagagggtatttagcccagatgatgtgacaagaggggccgctcgggctcggcttttc
ctggaggaaatggcagcattgcctataggtgagatggatgggagccagaccatggagata
gccaccaaactgaaagccgacttgcagaaagatgcagccgacaatccttggcttcaacag
ttcctctga
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