Panicum virgatum (switchgrass): 120691805
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Entry
120691805 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120691805
09124 Replication and repair
03420 Nucleotide excision repair
120691805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120691805
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120691805
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120691805
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120691805
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120691805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
120691805
NCBI-ProteinID:
XP_039830930
LinkDB
All DBs
Position
9N:complement(15134973..15148074)
Genome browser
AA seq
1230 aa
AA seq
DB search
MEDDEYEEGMEMGYGGHHPHRGGHAGYAEDEDEVGYGGGDGDEMDEDGDGDGDAEQRDEE
EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQA
EFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGH
DCEEVTETSDYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKV
LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQ
HIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQ
QVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLM
CALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFA
IKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL
AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEE
ISPAVIPQAAKIFVNGCWVGIHRNADLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYT
DYGRCSRPLFIVENQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETTMIS
MTINDLINARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQA
MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQED
SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDG
LAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNAD
GLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPS
RMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGR
KLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMI
AHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYAC
KLLFQELMAMAIAPRMLTHDIKTGKDQKKR
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacgagtacgaggaggggatggagatgggctacggcggccaccacccgcac
cgcggcggtcacgcggggtatgcggaggatgaggacgaggtagggtacggcggcggggac
ggggacgagatggacgaggacggggacggggacggggacgccgagcagcgggacgaggag
gagatcacccaggaggacgcctgggccgtcatctccgcctacttcgaggagaagggcctc
gtccgccagcagctcgactccttcgacgagttcatccagaacaccatgcaggagattgtc
gacgagtccgccgacatcgagatccgccccgagtcgcagcacaaccccggccgtcaggcc
gagttcgccgagactctgcacaagatcagctttggtcaaatctacctcagcaagccaatg
atgacagaggctgatggagagacagctactttgtttccaaaatcagcaaggctcaggaac
ctgacatactctgcgccactgtatgttgatgtatcatacagagtaatgaagaaaggacat
gactgcgaggaagttacagagacttcagattatccaaaagtgttcattgggaaggttcca
atcatgttgcgttctagttactgcacactatatcaacaatctgagaaggatctgactgaa
cttggggagtgtccttatgaccaaggcggttatttcattatcaatggaagcgaaaaggtt
cttattgcccaggagaagatgagcactaaccatgtctatgtttttaagaagaggcagcct
aataaatatgcatatgtggctgaagtccgttctatggctgagaaccagaacaggcctgcc
agcagcatgtttgtacggatgctttcacgagcaggagcaaaagggggttcatccggtcaa
catatccgtgctactctaccctatattcgtgcagacattcccattatcattgtttttcga
gcattagggtttgttgctgacaaagatatactggagcacatatgttatgacttctcagat
acacaaatgatggagttgctacgcccatccctggaggaagcttttgtcattcaaaatcaa
caggttgctctggactatattggaaagcgtggtgctacagttggtgtcactcgagaaaag
agaattaagtatgcaaaagaaatacttcaaaaggaaatgttgcctcatgttggtgttggg
gaattctgtgaaactaagaaggcatattatttcggatacattattcaccgtctactgatg
tgtgctcttggtcgaagagctgaggatgaccgagatcattatggcaacaaaaggctagat
cttgctggtccattgcttggagggctgtttagaatgcttttcaggaagttaacaagggat
gtcagatcttatgtgcaaaagtgtgtggataatggaaaggaagttaatttgcaatttgct
ataaaagcaaaaactattaccagtggcttgaagtattcccttgctactggaaactgggga
caggctaaccaagctggaaccagagcaggggtttctcaggtgcttaatcgcctgacctac
gcttctacactatcacatctccggaggctgaactctcccattgggcgtgaaggtaaattg
gcaaaaccccgccagttgcataattctcattggggaatgatgtgtcctgctgaaacacca
gaaggacaagcttgtggcttggtgaaaaatcttgccttgatggtatatatcactgttggt
tctgctgcaaatccaattttggaatttttggaggagtggggcacagaaaattttgaggag
atatcaccggccgtcattccgcaagctgctaagatttttgtcaatggttgttgggttgga
attcataggaatgctgacttgttggtgaagactcttcggcgtctaagaagacagattgat
gtcaacactgaagtaggtgtggttcgtgatattcgtcttaaagaacttagactgtacacg
gattatggtcgctgcagtcgtccgttgtttattgttgagaaccagagattgctcatcaag
aaggcacatatccgagcattacaacaaagggagactcctgatgaaggttggcacgaatta
gtctcaaaaggatatatagagtacatagatactgaagaagaggagactaccatgatttcc
atgaccataaatgaccttataaatgcgagacaaaacccagaggaggcatattctgagaca
tacacgcattgtgagattcatccttcgttgatacttggtgtttgtgcgtcaattattcct
tttcctgatcacaaccagtcacctcgtaatacatatcaatctgctatgggaaagcaagcc
atgggaatttatgtcaccaactaccagttaagaatggacacattggcctacgttctatac
tacccacaaaagcctttagttactacacgtgctatggaacatttgcacttcagacaatta
ccagcgggcattaatgcaattgttgctattgcttgctactctggttataaccaagaagat
tcagttattatgaatcaatcttccatagatcgtgggttcttccgatcactgtttttccgc
tcttacagagatgaggagaagaagatggggacacttgtcaaagaggaatttggtcgccca
aatagggagaatactatgggaatgcgacatgggtcatacgataaactagatgatgatggc
cttgcaccaccaggaacaagggtctctggtgaagatgtcattattgggaagacatctcct
attccacaagatgacgctcaagggcaagcttctaggtactcgaagcgtgatcatagtact
tctctgcgtcacagtgaaagtggcatggtagatcaggttctgttgacaacaaatgctgat
ggtctaagatttgtcaaggttagaatgcgatcagttcgcataccacaaattggagacaag
tttagcagtaggcatggacaaaaaggaactgttgggatgacttacacacaagaggacatg
ccgtggacaattgaaggcatcacacctgatattattgtgaatccgcatgctattccatcc
cgtatgactattggacagctgattgagtgtattatgggtaaagttgcagctcacatgggg
aaggaaggagatgcaactccatttactgatgttactgtggataacatcagcaaagctctt
cataaatgtggttatcaaatgcgtggatttgagaccatgtacaatggtcacactggaagg
aaactgacagctatgatatttctgggtccaacatattaccaaagactcaagcacatggtg
gatgacaagatacattcaagaggtcgtggccctgttcagatactcacccggcaaccagca
gaggggcgttcacgtgatggtggtctccgcttcggagaaatggaaagggattgcatgatt
gcgcatggagcagctttctttctgaaggaaaggctgtttgaccagagtgatgcatacaga
gtccatgtgtgtgagaaatgtggactcattgcaatcgccaacctaaagaaaaactcattc
gagtgcaggggctgcaagaacaaaactgacattgtccaagtccacataccctatgcttgt
aagcttctgttccaggagctcatggcgatggccattgctcctagaatgctcacccatgat
atcaagacagggaaggatcagaagaaaaggtga
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integrated database retrieval system
