Panicum virgatum (switchgrass): 120691847
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Entry
120691847 CDS
T07260
Name
(RefSeq) protein STABILIZED1-like
KO
K12855
pre-mRNA-processing factor 6
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120691847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120691847
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120691847
Complex C
U5 SnRNP specific factors
120691847
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
Suf
TPR_19
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
NatA_aux_su
PMC2NT
Motif
Other DBs
NCBI-GeneID:
120691847
NCBI-ProteinID:
XP_039830977
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All DBs
Position
9N:21508386..21512666
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AA seq
955 aa
AA seq
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MSGPTPTPTPTPLPPPPAARPARYDFLNSKPPPNYVAGLGRGATGFTTRSDIGPARAAPD
LPDRSASAAAAPAVGRGRGKPPGEDDGDDDGGDEEKGYDENQKFDEFEGNDAGLFSNADY
DDDDREADAVWESIDQRMDSRRKDRREARLKQEIEKYRASNPKITEQFADLKRKLADLSA
QEWESIPEIGDYSLRNKKKRFESFVPVPDTLLEKARQEQEHVTALDPKSRAAGGTETPWA
QTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSDAEISDIKK
ARLLLKSVTQTNPKHPPGWIAAARLEEIAGKLQAARQLIERGCEECPKNEDVWLEACRLA
SPDEAKAVIARGVMSIPNSVKLWLQAAKLETSDLNKSRVLRKGLEHIPDSVRLWKAVVEL
ANEEDARLLLHRAVECCPLHVELWLALARLETYDQARKVLNKAREKLPKEPAIWITAAKL
EEANGNTQSVSKVIERGIRSLQREGMDIDREAWLKEAEAAERAGSVLTCQAIVKNTIGIG
VDDEDRKRTWVADAEECKKRGSIETARAIYAHALTVFLTKKSIWLKAAQLEKSHGTRESL
DALLKKAVNYNPRAEVLWLMAAKEKWLAGDVPAARAILQEAYAAIPNSEEIWLAAFKLEF
ENNEPERARMLLAKARERGGTERVWMKSAIVERELGNVTEERRLLEEGLKLFPSFFKLWL
MLGQMEDRINRGAKAKEVYENGLKHCPSCIPLWLSLASLEEKISGLSKSRAVLTMARKKN
PATPELWLAAIRAELRHANKKEADALLAKALQECPTSGILWAASIEMASRHQRKGKSSDA
IKRCDHDPHVIATVSKLFWLERKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHGNADT
QKDVLKRCVAAEPKHGEKWQAISKAVENSHQPVEALLKKAVLAFDADEILNAAGA
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgtccggccccaccccgactccgaccccgacccctctcccgccgccgccggctgctcgg
cccgcgcggtacgacttcctcaactccaagccgccgcccaactacgtcgcgggtctcggc
cgtggcgccaccgggttcactactcgctcggatatcgggccggcccgcgcggcgcccgac
ctccccgatcgctccgcctccgctgccgctgccccagccgttggccgcggccgcgggaag
ccgccaggcgaggacgatggcgacgatgacggcggcgacgaggagaaggggtatgacgag
aaccagaagttcgacgagttcgagggcaacgacgccgggctcttctccaacgccgactac
gacgacgacgaccgcgaggcggatgcggtgtgggagagcatcgaccagaggatggactcg
cgccgcaaggaccgccgcgaggcgcggctgaagcaggagattgagaagtaccgcgcgtcg
aaccccaagattaccgagcagtttgctgatctgaagaggaagctggccgatctgtctgca
caggagtgggagagcatacctgagattggggactattcgctacgcaacaagaagaagcgg
ttcgagagttttgtaccagtgccggacacccttcttgagaaggcccggcaggagcaggag
catgtcacggcgcttgatcccaaaagccgtgcagctggtggcacagagacgccatgggcg
cagactcctgttaccgatcttacagctgtgggcgagggtcgtggcactgtgctttcgctg
aagttggataggctgtcagattcagtttctgggctcactgttgttgatcccaaggggtac
ttgacagacctgaaaagcatgaagattactagtgatgcggagatttctgacatcaagaag
gcacgactcctgctgaagtcagtgactcagacgaaccctaagcacccacctggttggatt
gctgctgctaggcttgaagagattgcaggcaaacttcaggctgctcggcaactcatcgag
cgtggctgtgaggagtgtccaaaaaacgaagatgtttggcttgaggcatgtcgtttggct
agtccagatgaggcaaaggctgtcattgccaggggtgttatgtcaattccaaattctgtg
aagctgtggttgcaggctgcaaaattagagaccagtgatctgaataagagcagggtgttg
aggaaaggattggagcacattcctgattctgtgcggttgtggaaggctgtagttgagctt
gcaaatgaggaggatgcaaggttgttgcttcacagggctgtggagtgttgcccactgcat
gttgagctgtggcttgcccttgcgaggctggagacctatgaccaggcaaggaaggtactt
aacaaggcaagggagaagctgcccaaggagcctgccatttggattactgctgcgaagctg
gaagaggctaatgggaacacacaatcagttagcaaggtgattgagagaggtatcagatct
ctacaaagagaaggaatggatattgatagggaggcatggcttaaagaagcagaagctgca
gagcgcgctggatctgttttgacttgccaggctattgtgaagaacacaattggcattggt
gttgatgatgaggatcggaagcgtacttgggttgctgatgccgaggaatgcaagaagcgt
ggttcaattgaaacagcgcgtgccatctatgctcatgcacttactgtgttccttactaag
aagagtatttggttgaaagcagctcagcttgagaagagccatgggactagggagtcactt
gatgcgctcctcaagaaggctgttaactacaatccacgagctgaagtgttatggcttatg
gctgcaaaggagaaatggttggctggggatgtgcctgctgctcgagccattcttcaagaa
gcttatgctgctatccctaattcagaagagatctggttggctgcattcaagcttgagttt
gagaacaacgaaccagagagagcaagaatgcttttggctaaggccagggaaagaggaggc
actgagagggtttggatgaaatctgccattgttgaaagggagctggggaatgtgactgag
gaaaggaggttgttagaggaaggtctgaagctattcccctcattcttcaaattgtggtta
atgcttggacagatggaagaccgcattaatcgtggagcaaaggccaaggaggtttatgag
aatggcctgaagcactgccctagttgcatccctctttggctttctctggccagcttagag
gagaagattagtggcttgagcaaatcccgtgctgttctcacaatggcaagaaagaagaac
ccagctacacctgaactctggcttgcagcaattcgagctgaactgaggcatgcgaacaaa
aaggaagctgatgctctgctggctaaggcactacaagagtgtccaacaagtggtattctg
tgggctgcctctattgagatggcatcacgccaccaacgtaaagggaagagttcagatgct
atcaagcgttgtgatcatgatccacatgtcattgcaactgtgtccaaactcttctggctt
gagaggaaggttgataaagctaggacttggttgaacagggctgttactcttgctcctgat
attggggatttttgggcattgtactataaatttgaacttcagcatggaaatgcagacact
caaaaggatgtcctgaaaagatgtgttgcagcagaaccaaaacatggtgaaaaatggcaa
gcaataagcaaggctgttgagaactcacatcagccagttgaggctcttttgaagaaagct
gtcctagcttttgatgcagatgaaattctcaatgctgcaggcgcctag
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