Panicum virgatum (switchgrass): 120691892
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Entry
120691892 CDS
T07260
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120691892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120691892
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
120691892
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120691892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
ATP_bind_1
CbiA
AAA_22
SRPRB
ABC_tran
AAA_24
AAA_10
AAA_29
T2SSE
Motif
Other DBs
NCBI-GeneID:
120691892
NCBI-ProteinID:
XP_039831058
LinkDB
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Position
1K:10534593..10540577
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AA seq
437 aa
AA seq
DB search
MATTATAGGAAAPPPRQCKLDPKSELRVEVPPDAPLRVRLVAGTAEIFGTELPPEGWVPI
PPRSKIAIFTWHGATLELDGVTESEYPSEETPMVVYVNTHAILDARRARARAAAAQGGDL
EASQGPRVIVAGPTDSGKSTLCKMLLSWAAKLGWKPTYVDLDIGQGSITIPGCISATPIE
KPIDIVDGIPLEMPLVYFYGHPTPSINPDVYKVLMKELAKTLERQFSGNAESRAAGMVIN
TMGWVEGLGYELLLNAIETYKANVLLVLGQEKLWKMLKDAVQSKPNIDVVKLQKSEGVVL
RNSKYRQKTRSFRIKEYFYGIANDLAPHSNIVNFSDVSVYRIGGGHQAPRSALPIGAEPV
ADPTRLVAVNISTDMIHTVLAISYAKEPDEIISSNVAGFIHVTDVDIQRKKLTYIAPCPG
DLPSRLLIASSLTWYEA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccacggcaaccgcggggggcgccgccgcaccgccgccgcggcagtgcaagctg
gacccgaagagcgagctgcgcgtggaggtgccccccgacgcgcccctccgcgtgcgcctc
gtcgccggcacggcggagatcttcggcaccgagctgccccccgagggctgggtccctatt
cctccccgctccaagatcgccatttttacttggcacggcgcgacgctggagctggacggg
gtcaccgagagcgagtatccttccgaggagacgccaatggtggtttacgtcaacacacac
gctattcttgacgctcggagggcaagggcaagggctgctgcagcacaggggggtgatttg
gaggcctcgcagggacctagagtgattgttgcgggaccaacagattctggaaaaagtacc
ctctgcaaaatgctccttagctgggctgccaaactgggctggaagcctacatatgtggat
ttagatatcggccaggggtctataacgatccctggatgtatttctgctaccccaattgag
aaacctatcgatattgttgatgggattcccttggagatgccactggtttacttctatggc
cacccaactccgagtatcaatccggatgtttacaaagttcttatgaaggagctagctaaa
acattggagaggcagttctctgggaatgctgaatctagggcagcaggaatggttatcaat
accatggggtgggttgaaggccttgggtacgagttacttctaaatgcaattgaaacttac
aaggccaatgtgttgttggtactgggacaggagaaactctggaagatgttaaaggatgca
gttcaaagcaagcccaacattgatgttgtaaaacttcagaaatcagagggtgttgtcctc
agaaattcaaaatatcgccaaaagactagaagcttccgaatcaaggaatacttttatggg
attgcaaatgatctggcgccacattcaaacattgtcaatttcagtgatgtctcggtatac
agaattggtggtggtcatcaagctcctcgctcagcattgcctattggtgcagagcctgtg
gcagatcctactcggcttgttgctgtcaacatcagcacggatatgattcatacagtgctg
gctatttcttatgctaaggaacctgatgaaataatttccagcaatgtcgctggattcatt
catgtcacagatgtggacatccaaaggaagaagctgacatacattgcaccttgcccgggg
gacttgccgagtaggctgctgattgcgagctcgcttacatggtatgaagcctga
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