Panicum virgatum (switchgrass): 120692061
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Entry
120692061 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14-like
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120692061
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120692061
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
120692061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_19
DEXQc_Suv3
AAA_30
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
120692061
NCBI-ProteinID:
XP_039831205
LinkDB
All DBs
Position
9N:74339050..74363255
Genome browser
AA seq
2082 aa
AA seq
DB search
MLAPLPRLTSALRGHFDADQAYLLRKTVLQALTLPRPHDEWELARKIVPGWDDAPSEVRQ
AYKQFIGAVVEMLNGEVVSEELHEVAQTAYAMFGGDDMEYDAAQRALVKRNELERLVGYT
VQDSVLKKLAQLAQKLGSLQRASAHEFAHRIADDVDENERSEFGANFDFKPPARFVIDVS
LDIPLGSAELGSETFEKGHYDAWSTSATSNLTAIRGSVSLRWLKDQCNLITRSDGSFSGD
ELAMALCRVLLSNKAGDEIAGELLDLVGDTAFEIVQDLLLHRKELVDAIQHGLTILKSEK
MTSSNQPKMPTYGTQVTVQTESERQLDKIRRKEEKRGKRGVDTGNGDIGVDDFLSLLLAS
ERKQPFDDVIGTGEGADSFQVTSLPQGTTRKHMKGYEEVKIPPTPTASLKPNEKLIEIRE
LDEFAQAAFQGYKSLNRVQSRIFQATYYTNENILVCAPTGAGKTNIAMIAVLHEVKQHFR
DGILHKNEFKIVYVAPMKALAAEVTETFSRRLSPLNLVVRELTGDMQLTKNEIEETQMIV
TTPEKWDVITRKSSDMSLSMLVKLMIIDEVHLLNDERGSVIEALVARTLRQVESMQSMIR
IVGLSATLPTYLEVAQFLRVNPETGLFFFDSSYRPVPLAQQYIGISERDYTKKTELFNTL
CYEKVVESIKQGHQALVFVHTRKDTGKTARTLIDLAAKAGELELFSSADHPQFPLIKKDV
SRAKSREVVEFFESGFGIHNAGMIRSDRSLMERLFGDGLLKVLVCTATLAWGVNLPAHTV
VIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITTHDKLAYYLRLLTSQ
LPIESQFLGSLKDNLNAEVALGTVTNVREACAWLGYTYLFIRMKTNPLVYGITWEEVLGD
PSMGAKQRTFIIDAARALDKAKMMRYDEKSGNFYCTELGRIASHFYLQYSSVETYNEMLR
RHMSESEVITMVAHSSEFENIVVREEEQDELEALARKACPLEIKGGPTDKHGKISILIQV
YTSRAPIDSSSLHSDAQYISQSLARIMRALFEICLRRGWSEMSSLLLEYCKAVDRKIWPH
LHPLRQFDKDLSPQILWKLEERNVDLDRLYEMEENEIGALIRFSHQGKLVKQYVGYFPYV
NLSAIVSPITRTVLKVDLHITPDFVWKDRYHGMSERWWIIVEDSENDTIYHSELFTLTKK
MARGTPTKISFNIPIFEPHPPQYYIRAISDSWLHAESLFTVSFHNLTLPQTQITHTELLD
LKPLPLSALGNKTYEDLYRFSHFNPIQTQAFHVLYHTDNNVLLGAPTGSGKTISAELAML
HLFNTQPDMKVVYIAPLKAIVRERMNDWRKRLVTQLGKKMVEMTGDFTPDLMALLSADII
ISTPEKWDGISRSWHSRSYVMKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTDRSI
RFVGLSTALANARDLADWLGVTDDGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP
AYAAICSHSPNKPVLIFVSSRRQTRLTALDIIQLAASDEKPRQFLSMDDNSLDMVLSQVS
DSNLRHTLQFGIGLHHAGLNDRDRSLVEELFSNNRIQVLVCTSTLAWGVNLPAHLVIIKG
TEYYDGKTKRYIDYDITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVE
SNLREHLHDHINAEIVSGTISNKEEAIIYLTWTYLYRRLVVNPAYYGLEDTETNTLNSYL
SRLVETTFEDLEDSGCIRVDDRSVKYLILGKIAAQYYLSYLTVSMFGSNIGPNTSLEAFV
HILSAAAEFDELPVRHNEDNLNRTLSGNVLYPVDQHHLDDPHVKANLLFQAHFSRAELPI
SDYATDLKSVLDQSIRIIQAMIDVCANSGWLSSALSCMHLLQMIIQGLWFERDSSLWMLP
SMNDDILGHLRGRGVSTVSALLDFSHEELHRLLQPFSASELYQDLQHFPRVDVKLQLQNE
QDRSKSPTLNIRVQLKNSRRSTSRAFAPRFPKAKQEAWWLVLGNATSSELYGLKRISFAD
RVVNTRMELPQMFNVQETKLILVSDSYLGFDQEYSLEHLTKR
NT seq
6249 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgccgcttccgcgcttgactagcgcgctccgcgggcacttcgacgccgaccag
gcctacctcctccgcaagaccgtcctccaggccctcaccctccccaggccgcatgacgag
tgggagctcgcccggaagatcgtgcccggctgggacgacgctcccagcgaagtgcgccag
gcatataagcaatttatcggggcagtggtggagatgttgaatggagaggtagtgtctgaa
gaactccatgaagttgctcagactgcatatgccatgtttggtggcgatgacatggagtat
gatgccgcccaaagagcccttgtcaaaaggaatgaattggaaaggcttgtgggctatact
gtacaagactcagttctaaagaagctagctcagttagctcagaagcttggttcccttcaa
cgggcaagcgcccatgaatttgcccacaggatagcagatgatgtagatgaaaatgagaga
agtgaatttggagcaaactttgatttcaagccacctgctcgtttcgttattgatgtttct
cttgacatacccttaggaagtgctgaattgggcagtgaaacatttgaaaaagggcattat
gatgcttggagcacatccgcaactagtaatttaactgctattaggggttctgtgagtttg
aggtggctgaaagatcaatgcaatttgataactagaagtgatggctcgttctcaggagat
gaacttgcaatggccttgtgcagagtgctcctatcaaataaagcgggcgatgagatagct
ggtgagctgttggacctggttggcgacactgcatttgaaatagttcaggatcttcttttg
catagaaaagagctagtagatgcaattcaacatggattgacgatattgaaatctgagaaa
atgacctcaagtaaccaaccaaagatgccaacttatggcacacaggtaactgtacaaaca
gagtctgagcgccaacttgataagattaggaggaaagaggaaaaacgtggcaaacgtggt
gtagacactggcaatggtgatattggtgtagatgatttcttatccctccttttggcaagt
gaaagaaagcagccatttgatgatgtgattggtactggagaaggggcagatagttttcaa
gtaacttcccttcctcaaggaaccacaaggaaacacatgaagggctatgaagaagtgaag
attccaccaactccaacggcatcactgaaacccaatgagaagctgattgaaataagagaa
ttagatgagttcgcccaagctgccttccagggatacaagtcactcaatcgtgtgcagagt
cgcattttccaagctacatactacaccaatgagaatattctagtttgcgccccaacaggt
gctgggaaaacaaatattgcaatgatagcagttcttcatgaggttaaacagcactttagg
gatggcattttacataaaaatgagtttaagatagtctatgttgctccaatgaaggccttg
gctgcagaggtaacagagacattcagtcgccgattatctccattgaacctggttgttaga
gaacttacaggagatatgcagttgaccaaaaatgagattgaagaaacacagatgatagtg
actactcctgagaaatgggatgtcattacacgcaaaagtagtgacatgtcactttcaatg
ctggttaagctgatgattattgatgaagtgcaccttctaaatgatgaaagaggttcagta
attgaggcactagtagctcgaactctccgccaggttgagtctatgcaatcaatgattcgc
attgttggcctatctgctaccctgcctacctacttagaggttgcacaatttttgcgggtt
aatccagagactggccttttcttttttgattcaagttatcgtccagttcctcttgctcag
caatacattgggatcagtgaaagggattacactaagaaaactgaactattcaatactttg
tgctatgagaaggttgtggagtccattaagcaaggtcaccaagcattggtttttgttcat
actcgtaaggacactgggaagactgctagaaccctgatcgacctagctgcaaaagcaggg
gagctggaattattttcaagcgcagatcatccccagtttccattaatcaagaaagatgtt
agtagagcaaaaagtcgtgaagttgttgaatttttcgaatctgggtttggcatacataat
gctggaatgatacgttctgacagaagtttgatggagcgcttgtttggtgatgggcttttg
aaagtccttgtttgtacagcaactttggcttggggagtaaacttaccagctcacacagtt
gttataaagggcacacagctatatgatcctaaagctggtgggtggcgagacctggggatg
cttgatgtgatgcagatcttcggacgtgctggaaggccacagttcgataaaagtggtgaa
ggaattattatcacaacacatgacaaattggcttattacttaaggttattgacaagtcag
cttccaatagagagccagttccttggatctctgaaagataatttaaatgctgaggttgcc
ttgggcactgtaacaaatgtcagggaggcctgtgcttggcttggctatacatacttattt
ataaggatgaagactaatcctctggtttatggaataacttgggaagaggttttgggagat
ccttctatgggcgcgaaacaaagaacattcattattgatgctgcacgtgcactagacaaa
gctaagatgatgcgctatgatgaaaagagtggaaacttttactgcacagaactaggtcga
attgcaagccacttttaccttcagtactccagtgttgagacttacaatgagatgcttcga
cgtcacatgagtgaaagtgaggtgattactatggtggcccattcctctgaatttgaaaat
attgtagtgagagaagaagaacaggatgaattagaagcccttgctaggaaagcgtgcccc
ttggaaattaagggtgggcctactgacaaacatgggaaaatttcaattctcatacaggtt
tatacatcccgtgctccaattgatagctcctctttacattctgatgctcaatacattagt
caaagtttggctcgcattatgagagcactatttgagatttgtctgcgtcgggggtggtct
gagatgtcatccttattactagaatattgcaaggccgtggaccgcaaaatatggcctcat
ctccatccacttaggcagtttgataaggatctttctcctcagatattgtggaaacttgag
gaaagaaatgttgatctggatcgtctttatgagatggaggaaaatgaaattggagcactg
atccggttttctcaccagggaaagctggttaagcaatacgttggatacttcccatatgtc
aacttatctgcaattgtgagcccaatcactaggacggttcttaaagttgacctgcatata
acgcctgattttgtgtggaaagatcgttatcatggcatgtcagaacgatggtggattatt
gttgaggattctgaaaatgacaccatctatcactctgagctattcacactgacaaagaag
atggcaagaggaacacccacaaagatatcttttaatataccaatatttgaacctcaccca
ccacagtactatatacgagccatatcagactcatggttacatgctgagtcactctttact
gtttcttttcataatctgacattgccacagacacaaataacgcacactgaacttttggac
ttgaagcctcttccgctgagtgctcttggcaacaaaacatatgaggatctctacagattt
tcacatttcaatccgatacaaactcaggctttccatgttctttatcacacggataataat
gtacttttgggagctccaactggaagtggaaagacaatttcggcagaactagcaatgctt
catcttttcaatactcaaccggacatgaaggtagtttacattgcccctctaaaggctatt
gtgcgagagagaatgaatgattggagaaaacgtcttgtaacccagcttgggaagaagatg
gttgagatgactggtgacttcactccagatttgatggccctattatcagctgacatcata
atttctacccctgaaaaatgggatgggattagtcgaagttggcatagtagaagctatgtt
atgaaggtggggctcatgatattggatgagatacatcttttgggagctgaccgtggaccc
atccttgaggtcattgtatcaagaatgcgatatatctcgtcacaaacagatcgttcaatt
cggtttgtcggtttatcaacagcattagcaaatgctcgtgatttagctgattggttgggc
gttacggatgacggtctattcaatttcaagcctagtgtgaggcctgtacctcttgaagtg
catatccagggatatcctgggaaattctactgtccgagaatgaatagcatgaacaaacca
gcttatgcagccatatgctctcattcacccaataaacctgttctcatttttgtgtcatca
cgtcgacagacaagacttacagcccttgatatcattcagcttgcagcatcagacgaaaaa
ccaaggcagttcctgagcatggatgacaactccctagacatggttctgtcacaagtttct
gatagtaatttgaggcatactctgcagtttggcataggtctgcatcatgcaggtttaaat
gacagagacagatccttggttgaggaactcttttcaaacaataggattcaggtactggta
tgtaccagcacgttggcgtggggtgtcaatcttccagctcatctggtcataatcaagggc
actgaatactatgatggcaaaacaaaaagatacattgattatgatatcacagatattctg
caaatgatgggtcgtgctggtcgaccgcaattcgaccaacatggcaaagctgttattctc
gtccatgaaccaaaaaagagcttttacaagaagttcctctacgaaccatttcctgtggag
agtaatctgagggagcacttgcacgatcacataaatgcagaaattgtttctggcaccatc
agcaacaaggaggaagcgatcatttatctcacttggacctacctatatcgcagattggtt
gttaatccagcctactatggattggaggatactgaaacaaataccttgaattcttatctc
tcaaggttagtcgaaactacatttgaagatcttgaggacagtggatgcataagagtggat
gaccgctctgtaaagtacttgattttgggaaaaatagcagcacagtattacctcagctac
ctcactgtttcaatgtttgggtcaaatattggccccaatacatcattggaagcctttgtg
cacatactgtcagctgctgcagaatttgatgagcttcctgtacgccacaatgaggataac
ttgaatcgaacactcagtggaaatgtcctgtatccagttgatcaacaccaccttgatgat
ccacatgttaaagccaacttgctctttcaggcacatttctcaagagctgaattaccaatt
agtgattacgccacagacttgaaatcagttcttgatcagagcatacgtattatacaggca
atgattgacgtatgtgccaatagtggatggctttcaagtgctttgtcttgcatgcatctc
ttgcagatgatcatacagggtctctggtttgagagggactcatcactctggatgttgcca
tccatgaatgatgatattctaggtcatctccggggtagaggagtctcaacagtctcagcc
ttgctggatttttctcatgaagaattgcacaggctccttcaaccattttctgcatcagag
ttgtaccaggatctgcaacatttccctcgtgttgatgtgaaacttcagcttcagaatgaa
caagatcggtccaaatctccaactttaaacatcagagtgcaattgaaaaattcacggcgt
tcaacatcaagagcatttgcacctagatttcccaaggcaaaacaagaagcttggtggctg
gtcctggggaatgctacaagctcagagttgtatggtttaaaaagaattagttttgcagat
cgggtggttaacactcgcatggaattgccacagatgttcaatgtccaggagacgaaactg
attttggtgtcagattcctacctaggttttgaccaggagtactctcttgagcatctcacc
aagcgttga
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integrated database retrieval system
