Panicum virgatum (switchgrass): 120692084
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Entry
120692084 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase ATL4-like
KO
K10664
E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120692084
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120692084
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
120692084
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
zf-C3HC4
zf-RING_5
zf-ANAPC11
zf-RING_16
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
120692084
NCBI-ProteinID:
XP_039831233
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All DBs
Position
9N:complement(60890093..60892056)
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AA seq
516 aa
AA seq
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MANAGAIEPASLQHGLGIYIIYGSPQMELWKLRSGRSLLDCSHVTLSSPRAHVVSSSLLP
PSLHCFCIPSPSSSHAHRTTSPRPARSTSHRPLRCPPEPSMAPATPATTWPRRGGRAFLR
ALVLVLAVARPASSQNVLSPPPGAAVSGSFSPPSPPAGGGDGGGGGAFSLTTSLLFVGII
AALFMLGFFSAYLRRCSEHATAADAARRGAALSANAAVAAAAFASAVGGGRRRAAGLDAA
SREALPVLTYATARAVKAGRGALECAVCLSEFDDAGEKLRLLPGCCHVFHAACIDVWLAA
HVTCPVCRADLSDPAVADAGHVLAADLAAQAGTPTDTVVSIDMEPPSESTPRRQDPTSPD
EQQQAETAEERMDRYTLRLPERLKREIDEAKRLRRAMSAVTASTALPSAASGRFTSAALR
TMSAARPSRRWSGLFRALTGSRASEADDHRRVVPLHTGDGEEVEVVVVQDDVDKYYAHSL
TFAGFVIDGDVAAGDWNPEVFQVSTAVPAAPATSQR
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgcgggagccatcgagccggcctcgctccagcacggccttggtatatatata
atctatggctctcctcaaatggaattatggaagctccgctccggtcgatccctactcgac
tgctcccacgtcactctctcctctcctcgcgcgcacgtcgtctccagctctctcctccct
ccgtctctccattgtttttgtattccatcaccgtcgtcgtcacacgcgcaccgcaccact
tccccccgccccgcgcgcagcacctcccaccggcccctccgctgtcctccggaaccttcc
atggcgcccgcgacgccggccacaacgtggccgcgccgcggcggccgcgcatttctccgg
gcgctggtcctcgtgctcgccgttgcccggccggcctcctcgcagaacgtcctgagcccg
ccgcccggggccgccgtctccggctcgttctcgccgccgtccccgccagccggcggcggc
gacggcggaggagggggcgcgttcagcctcaccacgtcgctcctcttcgttgggatcatc
gccgcgctcttcatgctcggcttcttctcggcctacctccgccgctgctccgagcacgcc
acggccgcggacgccgcgcgccgcggcgccgccctgagcgccaacgcggccgtcgcggcg
gccgcgttcgcgtcggcggtcggcggcggcaggaggcgcgccgcggggctcgacgccgcg
tcgagggaggcgctccccgtgctcacctacgccaccgcgcgggcggtcaaggccggccgc
ggggcgctcgagtgcgcggtctgcctctccgagttcgacgacgccggcgagaagctccgc
ctcctccccggctgctgccacgtcttccacgccgcgtgcatcgacgtgtggctcgccgcg
cacgtcacctgccccgtctgccgcgccgacctctccgatccagccgtcgcggacgccggg
cacgtcctggccgccgacctcgccgcccaggcgggaacgcccaccgacacggttgtcagc
atcgacatggagccgccgtccgagtcaacgccgcgacggcaggaccccacgtcgcccgac
gagcagcagcaggcggagacggcggaggagcggatggaccggtacacgctgcggctgccg
gagaggctcaaacgcgagatcgacgaggcgaagcgcctccgcagggcgatgagcgcggtg
acggcgtccaccgcgctgccgagcgccgccagcgggcggttcacgtcggcagcgctgcgg
acaatgtcggccgcgcggccaagccggcggtggtcggggctgttccgggcgctgacgggg
tcgcgagcgagcgaggcggacgatcaccggagggtggtgccattgcataccggcgacggg
gaggaggtggaggtggtggtggtgcaagacgacgtggacaagtactacgcgcacagcctc
acgttcgcggggttcgtcatcgacggcgacgtcgcggccggcgactggaacccggaggtc
ttccaggtctcgacggccgttcccgccgcgccggcgacgtcgcagcggtga
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