Panicum virgatum (switchgrass): 120692135
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Entry
120692135 CDS
T07260
Name
(RefSeq) chromatin-remodeling ATPase INO80-like
KO
K11665
chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120692135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120692135
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
120692135
INO80 complex (yeast)
120692135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DBINO
Helicase_C
ResIII
HDA2-3
DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
120692135
NCBI-ProteinID:
XP_039831303
LinkDB
All DBs
Position
9N:complement(63740933..63753989)
Genome browser
AA seq
1505 aa
AA seq
DB search
MDTRRAPPRGGGANGGGGGGLSYSTLFNLEPLLNFRVPVPEDLACYGHSSPNGSASSEGQ
GSLLDQYNGINDASHGLHRKRKRHLDGASDDDEADPYSNQITEEHYRTMLSEHVQKYRRS
KFREVTIGSDPPCVASPQLKDKSGGKKTMKHRSDSRNAATSDEVEASHVYSGIECIKTHG
GFNKLVATLDSTYLDMGDNIRYLVPEGYDKLASSLNLPVSSDIRVEEHFLKGMLDLRTLA
AMLGSDQKFEASNRGGLSEPLPQSESLQERVKVQKFSLQVTEDPFAIPEGAAGRIRRSII
SEAGNLQVHYVKVLEKGDTYEIIERSLPKKQIIKKEPSVIVKEEAEKTYRLWQSLATKSI
PKHHRNFNALVKKRQVDAKRFSDSCQREVKLKVSRSLKLMRCAAIRTRKLARDMLIFWKR
VDKEQYELRKKEEREAAEALKREEELREAKRQQQRLNFLLSQTELYSHFMQNKAGASAPP
DEEDVPDEDGEEDPEEAQLKREALRAAQHAVSQQKMRTNAFDSEVVRLRQTSESGLPTDD
SCSMDPNKIDLLHPSTMPEKSSVQTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEM
GLGKTVQAMAFLAHLAEDKNIWGPFLVVAPASVVNNWAEELIRFCPDLKILPYWGPERMI
LRKNINPKRLYRKDASFHILITNYQILVNEEKLLRRVKWQYMVLDEAQAIKSSSSQRWKT
LLGFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIEGHAEHGGAL
NEHQLSRLHAILKPFMLRRVKIDVIAEMTKKKEEIVPCKLSSRQQVFYQAIKNKISLNEL
LDGSRGNLNDKKLLSLMNIVMQLRKVCNHPELFERNEGSSYFYFADIPNSLLSPPFGELQ
DVHYAGKRNPITFEIPKLVYEGIICNMEISGNGCAFRSGYLNRLFNIFLPSNIHCSAIPE
AKSSNESVLSSGAFGFTRLSNLSPVEASFLATSSLFERLAFLAMQLNMKYTDEIMDAFID
LEGPKFSQNDATSNRAVARLLLSSTKDKPSLLRTKIGTGPGDCPYEALVLSHHDRLASNI
RLLRSAYAFIPPARAPPVNVWCADRNFAYKFTDEMHDPWAKKLFLGFARTSEFNGPKKPV
GLHPLIQEVHTDLPILEPMLQLPYRIFGSSPPMSNFDPAKMLTDSGKLHTLDMLLRRLRA
EGHRVLLFAQMTKMLDILEDYMNFRKFKYFRLDGSSAISDRRDMVRDFQNRNDVFVFLLS
TRAGGLGINLTAADTVIFYEIDWNPTQDQQAMDRTHRLGQTKEVTVYRLICKDTIEEKIL
QRAKQKNAVQELVMKGKHVQDDHLMRQEDVVSLLLDDTQIAHKLKEISMQAKDRQKKRRA
KGIKVDKEGDLTLEDLDDATAEAVDQDNTTNKKKKSSHKKHSKMHDNDNVDKNGEAPSGG
DLTGGGHTENEQIAEPRPKRSKRLMKDTSDDKEPAAADLEKPADEAENLTGHDDETEEVQ
DGTPS
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atggacactcgccgcgcccccccacgcggcgggggcgccaacggcggcggcggcggcggg
ctctcctactccacgctattcaacctcgagcccttgttgaacttcagggttcctgtacca
gaagatcttgcctgctatgggcatagcagcccgaatgggagtgcaagcagcgaaggtcaa
ggatccttgttggatcagtacaacggtataaatgatgcttcgcatggcctgcatcggaag
agaaaaaggcatcttgatggtgccagcgatgatgatgaggcagatccctatagtaaccaa
ataacggaggagcactaccgtacaatgctcagtgaacacgtccagaagtacaggaggtca
aagttcagggaggtcactattggttctgatcctccttgtgttgcaagcccccaattaaaa
gacaaaagtggtggtaaaaaaactatgaagcacagaagtgattctaggaatgctgcaaca
tcggatgaagtagaagcctcacatgtgtacagtgggatagaatgtattaaaacccatggt
ggttttaataagcttgtagcgacccttgattccacctacttagatatgggggataatata
cgctacttagttcctgagggttatgataagttagcatcatcccttaatctgcctgtttct
tctgatatacgtgtcgaggaacacttcttgaagggaatgctagatttgcgcaccctagca
gcaatgcttggttctgaccaaaagtttgaggcttccaatcgtggtggattatcagaacct
ctgccacagtccgaatccctccaagaaagggtaaaggtgcagaaattctctcttcaagtt
actgaggacccctttgcaattccggaaggagcagctgggaggatacggaggtctattata
tcagaagctggaaatttgcaggttcattatgttaaagtcttggaaaaaggagatacgtat
gagattatcgagcgtagcttaccgaagaagcaaataataaagaaggaaccttctgtaata
gtgaaagaagaggcggaaaaaacttacagactatggcagtctcttgctaccaaaagcatc
ccaaagcatcacaggaatttcaatgctttggtaaagaaacggcaagtagatgctaagcgc
ttctctgatagttgccaacgggaggtaaagctcaaagtaagccggtcactgaaactgatg
agatgcgctgcaatacgtacaaggaagctggctagggacatgctgatattttggaaaaga
gtagacaaagagcagtatgagttgaggaaaaaggaagaaagagaagctgctgaagctttg
aagcgtgaggaggagctgcgtgaagcaaaaagacagcaacagaggctaaactttctgctt
tcacaaacagagctttatagtcatttcatgcaaaacaaggctggtgcctcagcaccgcct
gatgaggaagatgtccctgatgaagatggggaggaagatcctgaggaagctcaattaaag
agagaggctttgagagcagctcagcatgccgtctctcaacagaagatgaggacaaatgca
tttgatagtgaagttgtgaggcttcgtcaaacttctgagtctggtcttccaactgatgat
tcatgtagcatggatccgaacaagattgatctattgcacccctcaacaatgcctgagaag
tcatctgtgcagacaccagagttgtttaagggtgtattaaaagagtatcagctaaagggc
ttgcagtggctggttaattgttatgaacaggggttgaatggcattcttgctgatgagatg
ggtcttgggaaaactgttcaggctatggcattcctggctcatttggctgaggacaaaaac
atatggggcccctttctagtggtggctcctgcatctgttgtgaataattgggctgaggag
ttgattagattctgtcctgacctaaagatacttccttactggggcccagagaggatgatt
ctgcgtaagaatatcaaccccaagcgtctctatcgcaaagatgctagctttcacattctt
attacaaactatcagatacttgtgaatgaagagaagcttttgagacgtgttaagtggcaa
tacatggtactggatgaggcccaggccataaaaagttcaagcagccagcgttggaagaca
ttgctgggctttaactgtagaaatcgtttactgctaactgggacaccgatacagaataat
atggctgagttatgggcacttcttcatttcatcatgcccactctatttgacagccatgaa
caatttaatgagtggttctcaaagggtatcgagggtcatgctgagcatgggggagctttg
aatgaacatcagcttagccgactgcatgctattttgaagccctttatgctgcgccgggtt
aagattgatgtcattgctgaaatgacaaaaaagaaagaagaaattgtaccctgcaaattg
agttctcgtcagcaagtcttctatcaagccataaaaaataagatatctcttaatgagttg
cttgatggaagtcgcggcaatctaaatgataagaagttacttagcctgatgaatattgtc
atgcagctacggaaggtctgcaatcacccggagctgttcgagcgcaatgagggaagttct
tacttttactttgctgatatcccaaactcacttctctctcccccatttggggaattacaa
gatgtacattatgccggcaagagaaaccctataacgtttgagattccaaagttagtttat
gagggaatcatctgcaacatggaaatttctggaaacggctgtgcatttcggagtggatat
ttgaacaggctgtttaatatatttttgcccagcaatatccattgttcagccattccggaa
gctaagtcatcgaatgagtctgttctatcatctggtgcattcggctttacacggttatcg
aatctgtccccagttgaagcttccttcttggccacttcatcattgtttgagagactagca
tttttagcaatgcaattgaatatgaagtacactgatgaaattatggatgcattcattgat
ttagaaggtcccaagttcagtcagaatgatgccacaagcaatcgtgcagttgctcggttg
ttgctttcttctacaaaggacaaacccagtttgcttagaacaaagattggaactggccca
ggtgattgcccatatgaagcactggtgctttctcatcatgacaggcttgcctcaaacata
aggcttcttcgttcagcatatgcttttattccgccagctagagcaccgcctgtaaatgtt
tggtgcgccgatagaaattttgcctacaagttcactgatgagatgcatgatccttgggcc
aagaaactgttcctgggatttgctcgtacttctgagttcaatggtcctaaaaaaccagtt
ggtcttcatcctttgatacaagaagtacatactgatttgcccatccttgagccgatgttg
cagctaccttataggatttttgggtcttctccgcctatgagtaattttgatccagctaaa
atgctcactgattctgggaagctccacaccttagatatgctgttacggcgccttcgagct
gaaggtcatcgtgtgctccttttcgctcagatgactaaaatgttggacatccttgaggat
tacatgaatttcagaaaattcaagtacttcagacttgatgggtcttctgctatctcggac
cgccgtgacatggtccgagatttccagaataggaatgatgtatttgttttcttgttaagc
acaagagctggcggacttggtattaatttgaccgctgctgatacagttattttttacgaa
attgactggaatccaacacaagaccagcaggcaatggatagaacacacaggcttggtcag
acaaaagaggtaactgtgtacagacttatatgcaaagatactattgaggagaaaatattg
caaagagcaaagcagaaaaatgcagtgcaagagttggtcatgaaggggaaacatgtccag
gacgatcatttgatgagacaagaggatgttgtttcgttacttcttgatgacacacagatt
gcacataagttgaaagaaatatccatgcaggcaaaggatcggcaaaagaaaagacgagcg
aagggcatcaaggttgacaaagaaggagatttaacgctcgaggacttggatgatgctact
gcggaagctgtagatcaagataacacaaccaacaaaaagaagaagagctcgcacaagaaa
cattcgaagatgcatgataatgacaatgtggacaagaacggagaggccccttcaggaggt
gatcttacggggggtggtcacacagaaaatgaacagatcgccgaaccaaggcctaaaaga
tcaaaaaggctgatgaaggacacgagtgatgataaggaaccagctgctgctgatcttgag
aaacctgcagatgaagcggaaaatctcacaggacatgatgatgagacagaagaggtgcaa
gacggcactccatcttaa
DBGET
integrated database retrieval system
