KEGG   Panicum virgatum (switchgrass): 120692244
Entry
120692244         CDS       T07260                                 
Name
(RefSeq) polygalacturonase ADPG1-like
  KO
K01184  polygalacturonase [EC:3.2.1.15]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir00040  Pentose and glucuronate interconversions
pvir01100  Metabolic pathways
Module
pvir_M00081  Pectin degradation
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00040 Pentose and glucuronate interconversions
    120692244
Enzymes [BR:pvir01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.1  Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
    3.2.1.15  endo-polygalacturonase
     120692244
SSDB
Motif
Pfam: Glyco_hydro_28 Pect-lyase_RHGA_epim Beta_helix NosD
Other DBs
NCBI-GeneID: 120692244
NCBI-ProteinID: XP_039831441
LinkDB
Position
9N:complement(3500246..3502410)
AA seq 517 aa
MASPRLVFVAPLLALLVVSVGALESAGGTATNGTSPDGASSLASSADGAAARTIRGGSLG
ASSSQGVLSLDRYGGSALAALTLASRLVFAAPLLAWLFAPSALEAPGRTNGTSIDGADAG
TTKARPLGSSVFALDRYGGRGDGRHDDTQALARAWKAACASSRPAVVLVPGGRRYLLKLV
TLHGPCRSSVTLTVKGTLVASPNRADWSDRDRRLWIVFRSVSKLIINGGGTVDGNGNKWW
PHSCKITKALPCKEAPTALSFHFCTNLRVEDLKIVNSQQIHMSVEDCTNAHLARLSITAP
GTSPNTDGIHITRSKDVKVTDCKIKTGDDCISIEHGTHNLHVSKVVCGPGHGISIGSLGD
DNSRAEVSGIIIDTVQFYGTTNGARIKTYQGGSGYAKDLTFQNMIMYNVKNPIIIDQNYC
DKNKPCKEQRSAVEVSNVVFKNIRGTTITKDAIKLKCSKHVPCHGITLQNINLKMQGGKG
ATESTCQNAKWRKSGTVIPQPCTAETYEYEGLELSSI
NT seq 1554 nt   +upstreamnt  +downstreamnt
atggcgtcgccgcgtcttgtgttcgtggcgcctctcctcgcgctgctcgtcgtgtccgtc
ggcgcgctagagtcggcgggcggcacggcgaccaatggcacctcgcccgacggcgcgagc
tccttggccagctctgccgacggcgccgccgccaggaccatcaggggcgggtcgctgggc
gcgtcgtcgtcgcagggcgtgctcagcctcgaccgctacggcggcagcgcgctcgcggct
ctgacactggcgtcgcgtctcgtgttcgcggcgcctctcctcgcgtggctcttcgcgccc
agcgctctagaggccccgggcaggaccaacggcacctccatcgacggagccgacgccggg
accaccaaggccaggccgctgggctcgagcgtgttcgccctcgaccgctacggcggccgc
ggcgacgggaggcacgacgacacgcaggcgctcgccagggcgtggaaggcggcgtgcgcc
tcgtcgaggccggccgtcgtgctcgtccccggtggcaggcgctacctgctcaagctcgtc
accctccacggcccgtgcaggtccagcgtcacgctcacggtgaagggcacgctggtggcg
tcgccgaacagggcggactggagcgacagggacaggaggctctggatcgtgttcaggagc
gtcagcaagctcatcatcaatggtggagggaccgtcgacggcaacggcaacaagtggtgg
ccgcactcgtgcaagatcaccaaggctctcccgtgcaaggaggctccgaccgctttgtcg
ttccacttctgcacgaatttgagggtggaggatctgaaaattgtgaacagccagcaaatc
cacatgtcggtggaagactgcaccaatgcgcacctggcacgtttgtctatcactgctcct
ggcacgagccctaacaccgacggcatccacatcactcgcagcaaagatgtgaaggtcacg
gactgcaagatcaagactggagatgattgcatatcaattgagcacgggacgcataatctc
catgtctcaaaagttgtgtgcggaccgggccacgggatcagcataggtagcttaggagac
gacaactcgagagctgaagtgtccggcattatcatagacacagtgcagttctacggcaca
accaatggagcacggatcaagacgtaccagggaggaagcgggtatgccaaggatctcaca
ttccaaaacatgatcatgtacaacgtcaagaacccgataatcatcgatcagaactactgc
gacaagaataagccatgcaaagaacagagatcagcggtggaggttagtaatgtggtattc
aagaacattagggggacaacaattaccaaggacgccattaaactcaagtgcagtaagcat
gtcccatgccatggcattaccttgcagaacattaacctgaagatgcagggcgggaagggc
gccacagaaagcacttgccagaatgcaaaatggaggaaatcggggaccgttatcccacag
ccctgcactgccgaaacctacgagtatgagggattggaattgagcagcatttaa

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