KEGG   Panicum virgatum (switchgrass): 120692279
Entry
120692279         CDS       T07260                                 
Name
(RefSeq) DNA repair protein UVH3 isoform X1
  KO
K10846  DNA excision repair protein ERCC-5
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    120692279
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120692279
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     120692279
SSDB
Motif
Pfam: XPG_I XPG_N XPG_I_2 UBM
Other DBs
NCBI-GeneID: 120692279
NCBI-ProteinID: XP_039831482
LinkDB
Position
9N:complement(75063358..75073161)
AA seq 1486 aa
MGVHGLWELLAPVGRRVLVETLAGKRVAVDASIWMVQFMRAMRDDSGEMVRDAHLLGFLR
RICKLLFLRVRPVFVFDGATPALKRRTLAARRRHRDAAQAKVRKTAEKLLLSHLKSRKLE
ELAEQIRSDRAKHDAKGKQVESSREGENENTHQDQNRNGDTNTSGGTMESINQEKVDEML
AASLAAEEETCFTGEEKHCTSVSLQAAQIDEDEDDDEGMIFPMTTGDIDPAVLASLPPSM
QLDLLVQMRERVMAENRQKYQKIKKEPAKFSELQIQSYLKTVAFRREIDQVQKCAAGKGV
GGVQTSKIASEANREFIFSTSFTGDKQMLAQRGEKEQIVDNAHSKREINSAVFRSNPTSS
SGKTKPSTSKHLRDFGPDVETYRDERGRIRVSRVRAMGIRMTRDIQRNLDFIKENEQVKS
SVQTNVHKISTVSEEPPDFPEHLFESNELQSSISLDEELLETAEDNHQISSLVRGSDNTS
ESSCYGKKETIEISFMDDETELKDNYDDIFLHLASGTASDIFADNDCLDKKMEESEGSEC
IWEEGVNEGETLPMKLDEKDNKSSMPENCSDDEVEWEEGDSLVLGVASSSERITCNVPKG
DMEEEALIQEAIRRSLEDFDKQASENVSTEDMQASVGNRSLQFSDDVSKISETHGETTSH
SGAALVKETNEESRIEINSDNDVIHSTGLIGTNKQENENQPQWVNNDGHIDVHRAHLLES
LPHCRTSTSNIAEKTSDMSKANCNNVMISRTEISETPVDDHDKNIEQNSMNSNQSKCSQD
VANIGETLKSPRKDLLVDEPVACTTEPEENATEGDLKVSTSEINYTQVGGNDDNHGISAT
YLDEELSHLRQEQIDLGHERRKLESHAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQC
AYMEMSNLVDGVVTDDSDVFLFGARNVYKNIFDDRKYVETYFMKDIESELGLTRQQLIRM
ALLLGSDYTEGVSGIGIVNAIEVAHAFPEEDGLQKFKEWIESPDPSIFGQLHMETSSKSK
KRKPGGNDSDGKGKSLEPECDQGSDDLSSNEAERIKEIFMSKHRNVSKNWHIPAAFPSES
VINAYITPQVDNSTEPFSWGRPDLGPLRKLCWERFGWGKEKADELLLPVLREYNKHETQL
RMEAFYSFNERFAKIRSKRIKKAIKGITGKSFPDTDEPEQDNPGTSKTTTKKDARSSSRG
RVRGKKDSSSEIRNMESPEDKETVDPNSFADMDELTKENNNTNKRNKGRPSGCSKGKGRN
RKNAGYDAKGSQVDSDTKYSSASDEDSHKRHTSNYKSEGIAPRRSSRMRKQVTYMEDGNE
ADGSDAPVHQNDENDPGEAAANTEDSGFNLVHQTSELNSNQMHTDIGAAEDINEDSQGFD
LHESHQADLAPKDYLFSGGGFCMEDGDDQEPAGDRCSAEMEKPGTSNPSEDTMEVSDSGK
STSLSTAEECTENAGMEARGAPSQQRRKASRGLSAMPTLTKRRRKS
NT seq 4461 nt   +upstreamnt  +downstreamnt
atgggagttcacgggctttgggagctgctggctccggtggggcggcgcgtgttggtggag
acccttgcggggaagcgggtggcggtggacgcgagcatctggatggtgcagttcatgcgg
gcgatgcgggacgacagcggggagatggtccgcgacgcgcatctcctcgggttcctccgc
cgcatttgcaagctcctcttcctccgggtccgccccgtcttcgtctttgacggggccact
ccggcgctcaagcgccgcaccctagccgcccgccgtaggcaccgtgatgccgcgcaggcc
aaggttcgcaagaccgccgagaagctccttctctcccatctcaaatcgaggaagcttgaa
gaattggcagaacaaattagaagtgacagggctaagcatgatgccaagggcaaacaagtc
gagagtagcagagaaggagaaaatgaaaatacacatcaagatcaaaaccgaaatggtgat
accaacaccagtgggggaactatggaatcgatcaaccaggagaaagtggatgaaatgttg
gctgcatcacttgctgcagaggaagagacatgcttcactggcgaggagaaacactgtaca
agtgtttcattgcaagcagctcaaattgatgaggatgaagatgatgatgaaggaatgata
ttccctatgaccactggcgacattgatccagcagtattggcttcccttcctccatcaatg
cagttagatcttcttgttcagatgagggagagagtgatggctgaaaacaggcagaagtat
cagaaaataaaaaaggaacctgcaaaattttcagagcttcaaatacagtcctatctcaaa
acagttgctttccgtcgagagatagatcaagttcagaagtgtgctgcaggtaagggtgtt
ggaggtgtccagacatcgaaaatagcatcagaagctaacagagagttcattttctcgaca
tcattcactggcgataaacagatgttggcacaaagaggtgaaaaggagcagattgttgac
aatgctcattcaaaaagggaaataaattctgctgtcttcagatctaatcctacaagtagt
tcaggaaaaacgaagccttctaccagcaagcatttgagggattttgggcctgatgttgag
acgtatcgtgatgagagaggacggattagagtaagtagggtcagagcaatgggaattcgt
atgactcgtgatattcaaaggaatttggattttatcaaagagaatgagcaggtcaaaagt
tcggtacagaccaatgtgcacaaaatatcaacagtcagtgaagagcctcctgattttcca
gaacatctttttgaaagcaatgagctccagagttctattagtcttgatgaagaactttta
gaaaccgccgaagacaaccatcagatttcatcgctagtgagaggatcagataacacttct
gagagctcctgttatggaaagaaggaaacaatagagatatctttcatggatgatgaaact
gaactgaaggacaactatgatgatatatttttacatttagcgtctggaacggcatccgac
atatttgctgacaatgattgtttggataaaaagatggaagaatctgaaggttctgagtgt
atttgggaggaaggtgtaaatgaaggagaaacacttcccatgaaacttgatgagaaggat
aataaatcatctatgccagagaattgcagcgatgatgaggtggaatgggaggaaggtgat
agccttgtacttggagttgcttccagcagtgaacgtattacatgtaatgtaccgaaaggg
gacatggaagaagaagcgctcatacaggaagcgataaggaggagtttagaggatttcgac
aagcaggcatctgagaatgtgagcactgaagatatgcaagcatctgttggaaatagatcc
ttgcaattctctgatgatgtttctaaaatatctgaaactcatggtgaaactacctcacat
tccggagcagctctcgtgaaagagacaaatgaagaatcaagaatagaaatcaattctgac
aatgatgtgatacatagtactggactaattggaactaataaacaagaaaatgaaaaccaa
cctcaatgggtgaataatgatgggcacattgatgtgcacagagctcatctgctagagtcc
cttccacattgtaggacatccactagtaatatagcagaaaaaacatctgacatgtcaaaa
gctaactgcaacaatgtgatgatatctagaactgaaatttctgaaacacctgtagatgac
catgataaaaatattgagcaaaacagtatgaattctaatcaatcaaagtgcagccaagat
gttgctaacattggagaaaccttgaagtcaccacgaaaggatcttttggttgatgaacca
gtagcttgtaccacggaaccagaagaaaatgctaccgagggagatctgaaggtttcaact
tctgagataaattatacacaagttggtggcaatgatgacaaccatggcatatcagcaact
tatcttgatgaggaattatctcatcttagacaagaacagatagatcttggtcatgaacga
cgaaagcttgaaagtcatgcagagtctgtaagcagcgagatgtttgccgaatgccaggag
ttgctccaaatgtttggactaccatatattattgcaccaatggaagctgaagctcaatgt
gcatacatggaaatgagcaaccttgttgatggagtcgtcactgatgattcagatgtcttt
ctgtttggagcaaggaatgtttacaagaacatatttgatgataggaagtatgtggaaaca
tattttatgaaggacattgagtctgagcttgggctaacaagacaacaattgattcgtatg
gctctgcttcttgggagtgactacactgaaggagttagtggtattggcattgtgaatgct
attgaagttgcgcatgcatttcctgaggaagacggactgcagaagtttaaagaatggatt
gaatcaccagatccatcgatatttggtcaactgcatatggaaacaagtagtaaatcgaag
aaaaggaaacctggtggaaatgattcagatggaaaggggaaaagcttggaacctgaatgc
gatcagggttccgatgatttatcttctaatgaggctgaacgcatcaaggaaatatttatg
agtaagcatagaaatgtgagcaagaattggcatatccctgcagcttttcctagtgagtca
gtaataaatgcatacattaccccacaagttgacaattcaacagagcctttttcatgggga
agaccagatttgggcccacttcgcaagttatgttgggaaaggtttgggtggggcaaggag
aaagctgatgaactgcttcttcctgttttgagagagtataataaacacgagactcagcta
cgcatggaggcattctattcattcaacgagagatttgcaaagattcgtagcaaaaggatt
aagaaagctatcaagggcattacaggaaaaagttttcctgacacagatgaacctgagcag
gataatcctggtactagcaagactactacgaagaaagatgcaaggtcctctagccgtggt
agagttagaggaaaaaaggacagcagttctgaaatcaggaatatggagagtccagaagat
aaggaaactgttgatcctaatagttttgctgatatggatgagcttactaaagaaaataac
aacacaaataagagaaacaaggggaggccctctggttgctccaaaggaaaagggcgaaac
aggaagaatgctggatatgatgcaaaaggaagtcaggtggattctgacacaaaatattct
tcagcttcagatgaggattctcataagaggcatacaagcaattacaaatctgaaggaatt
gcaccacgaaggtcaagtaggatgcggaaacaagtgacatacatggaagatggtaatgaa
gcagatggcagtgatgcccccgtgcatcaaaacgatgaaaatgacccaggcgaagctgct
gcaaacacagaagactcgggatttaatctggtccatcagacgagtgaactgaacagcaat
cagatgcatacagatataggcgcagctgaagatatcaatgaagattcccagggatttgac
ttacatgagagccatcaggctgatttggcgccaaaagactacctcttcagcggaggtggt
ttctgtatggaggatggtgacgaccaagaaccagctggtgatcgatgtagtgcagaaatg
gagaagccaggaacaagtaatcccagtgaagatacgatggaggtttcagacagtggcaag
agtacgagtctatcaacggctgaggagtgtacagagaatgcaggcatggaggcgcgaggt
gcaccgtcgcagcagagacgtaaggcaagccgtggtctgagcgccatgccaacgcttacc
aagcgtaggagaaaatcatga

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