Panicum virgatum (switchgrass): 120692298
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Entry
120692298 CDS
T07260
Name
(RefSeq) THO complex subunit 7B-like
KO
K13176
THO complex subunit 7
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120692298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120692298
03041 Spliceosome [BR:
pvir03041
]
120692298
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120692298
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120692298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THOC7
APG6_N
FAZ1_C
Motif
Other DBs
NCBI-GeneID:
120692298
NCBI-ProteinID:
XP_039831499
LinkDB
All DBs
Position
9N:60186315..60188384
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AA seq
242 aa
AA seq
DB search
MLAKGRKLAGRSEEMSAHYAFGPQDDDAIIKHRLLTRTTTTRGEPPLKKLQKKFMSFATE
IEKDADNISDCERLYKAFLQEINTFELPLLKSKAVVDANIREKESFNELQVEIERQILQA
QTDIEDLKKQLEQSKIERQHKEECEAIRKLVSLQPPRSETEKLIADLEKEIADLEGENIA
CVRTLELRKKQFALLLHVVDELQNSIEDEQKSIAYELRAIAEEQKMSIEEGSGGASDAMA
VD
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccaaagggaggaagttagctggaaggagtgaagaaatgtctgcacattatgcg
tttggaccacaagatgatgatgcgattattaaacacaggcttctgactaggacgacaact
accaggggtgaaccaccactaaagaagcttcagaaaaagttcatgtcatttgccactgag
attgagaaggatgcagataacataagtgactgtgagagactgtacaaggccttcctgcag
gaaatcaacacctttgagctgcctcttctgaaaagcaaggctgttgttgatgcaaacatt
agggagaaggagagctttaatgagctgcaggttgagattgagcgtcagatcttgcaagct
cagactgatattgaggatcttaagaagcaacttgagcagagcaagatcgagagacagcac
aaagaggaatgtgaagcaatccggaagctggtttctttgcagcctccgcggtcagaaact
gagaaactcattgcagaccttgagaaggagatagctgatttggagggtgagaatatagca
tgtgtaaggactttggaactaaggaagaagcaattcgcccttcttcttcatgtggttgat
gaattgcagaactcgattgaagatgagcaaaagagtatagcatatgagctgagagctatc
gctgaagagcagaagatgagcatagaagaaggaagtggcggtgcttcagatgccatggca
gttgactga
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