Panicum virgatum (switchgrass): 120692331
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Entry
120692331 CDS
T07260
Name
(RefSeq) protein argonaute 12-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120692331
03036 Chromosome and associated proteins [BR:
pvir03036
]
120692331
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120692331
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
120692331
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
120692331
microRNA pathway
RISC loading complex
120692331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoMid
ArgoL2
Motif
Other DBs
NCBI-GeneID:
120692331
NCBI-ProteinID:
XP_039831535
LinkDB
All DBs
Position
9N:12909097..12915689
Genome browser
AA seq
1052 aa
AA seq
DB search
MSSRGGGGGRRGGRSDQGGGRGSAGAGGGRGRGAAAPGTAQRGGHFQPPHTAAGAGRGGY
PGVAQGRGQQVSAPTPAEVEALRRQVERTAMVTQAPAAGLREGPSSAPAQRQAPAPGLAP
AAAARPQMQANAPGQAAPPATAGSSSSAPPRAPVPGQAPAAAAPSETQRKAPAQATQMAL
AAPAGRMPPASSKAVVLAPRPGYGTAGRRCRVRANHVQVRLADKEIYHYDVAITPESISR
ARNRWIIDELVNLHKEYLGGRLPVYDGKKGLFTAGPLPFKAKEFVLMLTNPERANQGEKE
YKVAIKDASKIDMYSLQQFLAGRQREMPQEIIQALDIAMRECPSSRYTSISRSFFSSQEF
GPGGSLGNGVECWRGYYQSLRPTQMGLSLNIDISATAFYKAQPIIDFVVEYLNVRDTSKR
LSDQERIKLKKALKGVRVETTHRRDISIRYKITGLTLAPLNDLTFDQDGTRVSVVQYFRR
QYNYSLKYTHWPCLQAGNPTRPTYLPMEVCNIAKGQRYSSKLNEHQVRNILRLACVRPAE
REERTLGILKKNNYTSDDYAKEFGIKVNNQLALVDARVLPAPKLKYHDSGKEKLCNPSVG
QWNMINKRMVDGGSIKFWACLTFTSHIHPNEIGRFCEDLAMMCNSIGMQMRTQPCVPIKK
ARQDNVEAAIRDIYDHSAQVLAQQGLTGKQLEFLVIILPDMSGSYGLIKRLCETEVGVIT
QCCAPRNVKKGGKQLLENLALKINAKVGGRNTVLEAALNRNIPLLTDMPTIVFGADVTHP
PPGEGSSPSIAAVVASMDWPQVTKYKCLVSSQGHRVEIIDNLFTEARDSVKGIVRGGMIR
DLLISFLKSTGHKPRRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEEGYLPPVTFVVV
QKRHHTRLFPENHRSRDQTDRSGNILPGTVVDTTICHPSEFDFYLCSHSGIQGTSRPAHY
HVLFDENGFSADALQTLTYNLCYTYARCTRSVSIVPPAYYAHLGAFRARYYMEEDNSDQG
SSTGTSRTYDPSVPVKQLPRIKENVQQFMFYC
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgcgtggcggtggaggcggccggcgcggaggccggagcgaccagggagggggc
cgtggctccgccggcgccggcggagggcgcggccgtggcgccgcggcaccaggcaccgcc
cagagagggggccacttccagcccccacatacggcagccggggccgggagaggtggctac
cctggcgtggctcaggggcgcgggcagcaggtatcggcgccgacgcctgcggaggttgag
gcgttgaggcgccaggtggagaggacggctatggtgacacaggcgccagcggcggggctc
cgcgagggcccgtcgtcggccccagcgcagaggcaggctccggcgccgggtctggctcct
gcggccgcggcgcgaccgcagatgcaagcgaatgcaccgggccaggcggcgccgccggcg
actgcagggagctcgtcgtcggccccaccaagggcaccggtgccgggccaggcgcctgct
gccgcggcaccatcggagacgcaaaggaaggcaccggctcaggcgacacagatggcgctg
gcggctcctgcagggaggatgcctcccgcgtctagcaaggcggtggtgctcgccccgcgg
ccggggtacggaacggccggccggaggtgccgcgtgcgcgccaatcatgtacaagtccgg
ctcgccgacaaggagatctaccactacgatgtggcgatcactcccgaatcgatctcccgg
gcaagaaacagatggatcatcgacgagctcgtgaacttgcacaaggagtacttgggcggg
cggcttcctgtttatgatggaaagaaaggcctgttcacagcaggtccactgccattcaaa
gccaaagaatttgttctcatgctaacaaaccctgagagagcaaaccagggggagaaagaa
tacaaggtggcgatcaaggacgcctcaaagatagatatgtacagccttcagcagttctta
gctggtaggcagagagaaatgccgcaggagattatccaggctcttgatatcgctatgagg
gaatgcccatcctctaggtatacatccatctcaagatcatttttctcatcacaagaattt
ggacctggtggatcgctcggaaatggtgttgaatgctggaggggttactatcagagccta
cgccccacacagatgggcttgtcccttaatattgatatttctgcaacagcattttacaag
gctcaacccatcatagactttgtagtagagtatctgaacgtccgtgatacttcaaagcgt
ttgtctgatcaggaacgcataaaactgaaaaaagcactcaagggtgtccgggtcgagacc
acacatcgccgtgatatatccatacgatacaagattacagggctaaccttagctccgtta
aacgatttgacgtttgatcaagatggcacaagggtatcagttgtgcagtacttcaggcgg
caatataattactcactgaaatacactcactggccatgccttcaagctggcaatcctacc
agaccgacctatttacctatggaggtttgcaacatagctaagggacaacgctactcgagt
aagctgaatgagcatcaagtcagaaatatcttgaggttggcctgtgtgcggccagcagag
agggaggagagaactttagggatactcaagaagaacaactatacctctgatgattatgca
aaagaatttggcatcaaggtgaacaaccaacttgctttggttgatgctcgtgtgcttccg
gcaccaaagcttaaataccatgactctggaaaagaaaagctttgtaacccttctgttggc
cagtggaacatgattaataagagaatggttgatggaggatctatcaaattttgggcatgt
ctaacttttacctctcatatccatccaaatgagatcggaaggttttgcgaggatcttgca
atgatgtgcaacagcattggcatgcaaatgagaacccaaccctgtgtaccaatcaagaaa
gcacgccaagacaatgtagaagctgcaatcagagatatttatgatcattctgcacaagtg
cttgctcagcaaggtttaacagggaaacaacttgagtttctcgttataattttacccgat
atgagtggttcttatgggctgattaaaagactttgtgaaactgaggttggtgtaataact
cagtgttgtgcacctaggaatgttaagaaaggaggaaaacagttacttgaaaatctcgcc
ctaaaaatcaatgctaaggttggaggaaggaacaccgtgcttgaagctgctttgaacagg
aatataccacttctaacagacatgcctactatagtcttcggagctgatgttacccatcca
cctcctggtgagggctcgtctccatccattgcagcggtcgttgcatccatggattggccg
caagttactaagtacaaatgcttggtgtcttcacaagggcatagggtcgaaatcatagat
aatcttttcacagaagcgagagattcagtcaagggcattgtcagaggtggaatgattagg
gatttgcttatttcattcttaaagtcaactggccataagcctaggaggattatattctat
cgagatggtgttagtgaggggcagttcagccaagtcttgctttatgaaatggatgcaatt
cggaaggcatgcgctagtttagaggagggttatcttcccccagtcacatttgttgttgtg
caaaagaggcatcatacccgcctgtttccagaaaatcatcgttcaagagatcagacagat
aggagtggaaacattctacctggtactgttgttgacacaactatctgccatcccagcgag
tttgatttttacctgtgcagccattctggtattcaggggacaagccgcccagcacattat
catgttcttttcgacgaaaatgggttctctgctgacgcactgcagaccttgacttacaat
ctgtgctacacctatgcccggtgcactcgttcagtctctatagttcctccagcgtattat
gcgcatctgggcgcgttccgtgcgcgttactacatggaagaggacaattccgaccaaggc
tcatcgacggggacctctcggacgtatgatccatctgtccccgtgaagcaactcccccgg
atcaaggaaaacgtccagcagttcatgttctactgctag
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