Panicum virgatum (switchgrass): 120692529
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Entry
120692529 CDS
T07260
Name
(RefSeq) protein SHORT-ROOT 2-like
KO
K27743
protein SHORT-ROOT
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120692529
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Other transcription factors
GRAS
120692529
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Gene cluster
GFIT
Motif
Pfam:
GRAS
Motif
Other DBs
NCBI-GeneID:
120692529
NCBI-ProteinID:
XP_039831791
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Position
9N:complement(57456688..57459325)
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AA seq
628 aa
AA seq
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MDTLFRLVSLHQHHHHHPQAPSSPDQHQHHHQSPYSSRSTSRSTTSTGSRSSPGSHRTHN
HHYYPHSHYNTTTSSSSYYYYDPAAGAGGGGGGYYYDHQPPAPYQEECGNDHGFYMDEDF
SSSSSSRHFHHQPSSAAPPAPAHPPPASSPAPTPPQPPPASSSAGGGHGALFEAADFSFP
QVDIDLDFGSPASSSGAAGGSGAAAASASAGGGAAGRWAAQLLLECARAVAARDSQRVQQ
LMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPHTLRTLAAASDRSTSFESTRRTAL
KFQELSPWTSFGHVAANGAILEAFLEAAAASSSSSSSQPPRLHILDLSNTFCTQWPTLLE
ALATRSSDDTPHLSITTVVPSAAPSAAAQRVMREIAQRLEKFARLMGVPFSFRAVHHAGD
LAELDLDGLDLREGGATTALAINCVNALRGVAPGGARRRDAFVASLRRLEPRVVTVVEED
ADLVAASDSDASSEESSTDAAFMKVFTEGLRFFSAYMDSLEESFPKTSNERLALERAAGR
AIVDLVSCPASESAERRETGASWARRMRSAGFSPVAFSDDVADDIRSLLRRYREGWTLQE
PGTDDSAAAGVLLAWKEQPVVWTSAWRP
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggatacgctgtttcggttggttagcctccaccagcaccaccaccaccacccacaggcg
ccctcctcgccggaccagcaccagcaccaccaccagtcgccctacagctcccgctccacg
tcccgcagcaccacctccaccggctcccgctcctccccgggctcccaccgcacccacaac
caccactactacccccactcccactacaacaccaccaccagcagcagcagctactactac
tacgaccccgctgccggcgccgggggaggcggcggcggctactactacgaccaccagccg
ccggcgccgtaccaagaagaatgcggcaacgaccacggcttctacatggatgaagacttc
tcctcctcctcctcgtcccgccacttccaccaccagccgtcgtcggccgccccgccggcg
cccgcgcacccgccgcccgcgtcatccccggcgcccacgccgccgcagcccccgcccgcg
tcgtcgtccgcgggcggagggcatggcgcgctgttcgaggccgcggacttctcgttcccg
caggtggacatcgacctcgacttcggctcccccgcgtcgtcatccggcgcggccggcggg
agcggcgccgccgccgcttcggcgtcggcgggcggaggcgccgccgggaggtgggccgcg
cagctgctgctggagtgcgcgcgcgccgtggccgcgcgcgacagccagcgcgtgcagcag
ctcatgtggatgctcaacgagctggcctcgccgtacggagacgtggaccagaagctggcg
tcctacttcctccagggcctcttcgcgcgcctcaccacctccggcccgcacaccctgcgc
acgctcgccgccgcgtcggatcggagcacgtcgttcgagtccacgcgccgcacggcgctc
aagttccaggagctgagcccgtggacgtcgttcgggcacgtcgccgccaacggcgccatc
ctcgaggcgttcctggaggcggcggcggcgtcgtcatcctcgtcgtcgtcgcagccgccg
cggctgcacatcctggacctcagcaacaccttctgcacgcagtggccgaccctgctcgaa
gcgctggccacgcggtcgtcggacgacacgccgcacctgtccatcaccaccgtcgtgccc
tccgccgcgccgtccgcggccgcgcagcgcgtcatgcgggagatcgcgcagcgcctcgag
aagttcgcgcgcctcatgggcgtgcccttcagcttccgcgccgttcaccacgcgggggac
ctcgccgagctcgacctcgacggcctcgacctccgcgagggcggcgccacgaccgcgctc
gcgatcaactgcgtcaacgcgctgcgcggggtcgcgccgggcggcgcgcgccggcgcgac
gcgttcgtcgcctcgctccgccggctcgagccgcgcgtggtcaccgtcgtcgaggaggac
gccgacctcgtggcggcgtccgactcggacgcgtcgtccgaggaatccagcacggacgcg
gcgttcatgaaggtgttcaccgagggcctccgcttcttctcggcgtacatggactccctc
gaagagagcttcccgaagaccagcaacgagaggcttgcgctggagagggcagccgggcgc
gccatcgtcgacctcgtgtcctgcccggcgtccgagtccgccgagaggcgggagacgggg
gcgtcgtgggcgcggcgcatgcggtcagccggcttctccccggtggcgttcagcgacgac
gtcgccgacgacatcaggtcgttgctgcggcggtaccgggagggatggaccttgcaggag
ccaggcacggacgacagcgcggcggcgggggtgctcctcgcgtggaaggagcagcccgtc
gtctggacaagcgcgtggaggccatga
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