Panicum virgatum (switchgrass): 120692560
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Entry
120692560 CDS
T07260
Name
(RefSeq) vacuolar protein sorting-associated protein 52 A-like isoform X1
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120692560
Membrane trafficking [BR:
pvir04131
]
Protein recycling
Others
EARP complex
120692560
Endosome - Golgi transport
Tethering complex
GARP complex
120692560
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
120692560
NCBI-ProteinID:
XP_039831818
LinkDB
All DBs
Position
9N:59009959..59021052
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AA seq
700 aa
AA seq
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MEAVPAAEALDGHKDRFDLGVFVGDLALDEELTSDDESLEGLQQELDDCKNDQEVANILA
NGIKLRAYTKGVENNIRQVELDSIQDYIKESENLVLLHDQIRDCDNILSQMETVLTGFQT
EIGSISSEIKVLQEKSMDMGLKLKNRKAAESKLSKFVEDIIVPPRMIDIIVDGEVNDEYM
RALKTLSKKIKFIDADPMVKSSKALKDVQPEVERLRQKAVSKIFEFVIQKFYALRKPKTN
IQILQQSVLLKYKYTIIFLKEHAKEIYAEVRAAYIDTMNKVLSAHFRAYIQALEKLQMDI
ATSTDLLGVETRSTGFLFSIGKESLKTRSSVFALGERINILKEIDQPALIPHIAEAKSQK
YPYEVLFRSLQKLLINTATSEYLFTDDFFGEESIFHDIFAGPIQVIDEHFNAVLLNCYDA
IGIMLMIRIIHQHQLIMFRRRIPCLDSYLDKVNMSLWPRFKMVFDLHLNSLRNANIKTLW
EDDVHPHYVTRRYAEFTASLVHLNVEHGDGQLDLNLERLRMAIEDLLVKLAKMFSKPKLQ
TIFLINNYDLTIAILKEAGTEGGKAQLHFEEVLKSNIAIYVEELLQEHFSDLIRFVKTRP
ADETATSSEKVSISEVEPLVKDFASRYKAAIELMHKDVITSFSNFLCGMEILRSALAQLL
LYYTRLTECVKRINGGSALNKDLVSISSILFEIKKYSRTF
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtccccgccgcggaggccctcgacgggcacaaggacaggttcgacctcggg
gtcttcgtcggcgacctcgccctcgacgaggaacttaccagtgacgacgagtccctggag
gggctgcagcaggagctcgacgactgcaagaatgaccaggaggtcgcgaacatcctggcc
aacggcatcaagctgcgcgcgtacacaaaaggtgtcgagaataacatacgccaagtcgag
ctggattctatacaggattacattaaggagagtgaaaatctagttctgctgcatgatcaa
attcgtgattgtgacaatattttgtcccaaatggaaacggttctgactgggttccagaca
gaaattggttccataagttcagagataaaggtccttcaggagaaatctatggacatggga
ttaaagctgaaaaatcgtaaggctgcagagtctaaattgtcaaaatttgttgaggatata
atagtaccaccaagaatgattgacataattgttgatggagaggtcaacgatgaatatatg
agagcactcaagactctaagcaaaaaaatcaagttcattgatgctgatcctatggttaaa
tcatccaaggctttaaaagatgttcagcctgaggtcgagagactacggcagaaagctgtc
tcaaagatttttgagtttgtcatccaaaagttctatgccttgagaaaacccaaaactaat
attcagattctacagcagagtgtccttcttaaatacaaatacacaataattttccttaag
gaacatgctaaggagatatatgcggaagttcgtgcagcatatattgataccatgaataag
gtactaagtgcacattttcgtgcgtacatacaagcgctagagaaactacagatggacata
gctacttccactgacttacttggtgttgaaaccagaagtacaggcttccttttctccatt
ggaaaagaatctctgaaaacccgttcttcagtttttgctttgggtgaacgaataaacata
ttaaaggaaattgatcagccagcattgatacctcatatagctgaagcaaagtcacagaaa
tacccatatgaagttcttttcagaagcttgcagaaacttcttattaacactgccacttct
gagtacctgttcaccgatgatttcttcggcgaagaatctatattccatgatatatttgca
ggaccaattcaagtgattgatgaacatttcaatgctgtactcctgaactgttatgatgca
attggaataatgcttatgatcagaataattcatcagcaccagctcatcatgttcaggcga
cgaatcccatgtttggactcttacctagacaaggttaatatgtcactctggcctcggttc
aagatggtgtttgacttgcatttgaacagcttgcgaaatgcaaatattaagacactttgg
gaggatgatgtccatccacactatgtcacaaggagatatgctgaatttacagcttctcta
gttcatctcaatgttgaacatggggatggtcagcttgatcttaatttggagcgattgcgg
atggctatcgaggacttgcttgttaagttggctaagatgttcagtaaaccgaagctgcaa
actattttcttgataaataactatgatttaacaattgccattttgaaggaggctggaaca
gagggagggaaggcacaactccacttcgaggaggttcttaagagcaacattgcaatttat
gtggaagagttgctccaggagcatttcagtgacctgatcagatttgtcaaaactcgtcct
gcggatgaaacggctacgagttcagagaaagtcagcatttctgaagttgaaccactggta
aaggatttcgctagtcggtataaggctgcgattgagctgatgcacaaagacgtgatcaca
tctttcagcaacttcctgtgcgggatggagatcttgaggtcggcgctcgcccaactcctg
ctgtactacaccaggcttaccgagtgtgtcaagaggatcaatggaggctctgctctgaac
aaggacctggtgtccatatcctccatcctgttcgagatcaagaagtattctaggaccttt
tag
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