Panicum virgatum (switchgrass): 120692572
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Entry
120692572 CDS
T07260
Name
(RefSeq) exosome complex component RRP41 homolog
KO
K11600
exosome complex component RRP41
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120692572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120692572
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120692572
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
120692572
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
120692572
NCBI-ProteinID:
XP_039831859
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All DBs
Position
9N:79036796..79040636
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AA seq
242 aa
AA seq
DB search
MEFVDALTGFRIDGRRPNEMRKLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKG
QQVNSKEALVRCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTDLMPRSQID
IFVQVLQADGGTRSACINAATLALADAGIPMRDIITSCSAGYLCSTPLLDLNYVEDSAGG
PDVTVGILAKMDKVTLLQMDAKLPMDTFENVMELAIEGCKAIATYIREVLLENTKRLECQ
RG
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgtggacgccctcaccggcttccgcatcgatgggcgccgacccaacgagatg
cggaagctcaagggcgaggtcggcgtcgtcgcgcgggccgacgggtccgcgctgttcgag
atgggcaatactagggtcatagccgccgtctacggccctcgagaggtccagaacaaaggt
cagcaagtgaacagcaaagaggctttggttcgttgtgagtacaggatggcagaatttagt
acaggagatcggagaagaaagccgaaaggtgacaggcgatcaacagaaatttctcttgtt
attcgacagacaatggaggcaagcatattaacagatttaatgccacgttcacagattgat
atatttgtccaagttcttcaagctgatggtggaacaaggtcagcatgcatcaatgccgca
acactagctcttgcagatgccgggattccaatgcgagacattatcacgtcttgtagtgct
gggtatctgtgttccactcctttgcttgatctgaattacgtagaagacagtgctgggggt
ccagatgtcacagttggtattcttgcaaagatggacaaagtgactcttcttcagatggat
gcaaaattaccgatggacacatttgaaaacgtaatggaacttgccatagaagggtgcaaa
gcaattgcgacatacatccgagaggtgctattggagaacacaaagcggctggagtgtcag
cgtggttaa
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