Panicum virgatum (switchgrass): 120692606
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Entry
120692606 CDS
T07260
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
120692606
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_4
PAS_9
PAS_8
PAS_3
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-GeneID:
120692606
NCBI-ProteinID:
XP_039831907
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Position
9N:complement(66732082..66739417)
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AA seq
1165 aa
AA seq
DB search
MASGSRATPTRSPSSARPAAPRHAHHHHHSQSSGGSTSRAGGGGGGGGGGGAATESVSKA
VAQYNLDARLHAVFEQSGASGRSFDYSQSLRAHSLPTPSSEQQIAAYLSRIQRGGHIQPF
GCTLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSAAPPPVSLGADARLLFSPSSAV
LLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ
SQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAECRLN
NLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGLSQPLCLVGSTLRA
PHGCHAQYMANMGSIASLVMAVIISSGGDDEQTARGGISSAMKLWGLVVCHHTSPRFIPF
PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMD
LVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYHGAAAL
GDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV
KSRSLPWENAEMDAIHSLQLILRDSFRDVAEGTSNSKAIVNGQVQLGELELRGINELSSV
AREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSIEEAMGKSLVNYLIFKESEEIV
EKLLSRALRGEEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDVTG
EKVAMDKFVNIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRSEVIGKL
LIGEVFGNICQLKGPDALTKFMVVLHNAIGGQDYEKFPFSFFDKNGKYVQSLLTANTRSK
MDGKSIGAFCFLQIASAELQQALEIQRQQEKKCYARMKESAYICQEIKNPLSGIRFTNSL
LQMTDLNDDQRQFLETSSACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVVSQ
AMVLLRERDIQLIRDIPDEIKEASAYGDQYRIQQVLSDFLLSMVQFAPTENGWVEIQVRL
NVKQNSDGTDSALFIFRFACPGEGLPPDIVQDMFNNSCWSTHEGIGLSTCRKIVKLMGGE
VQYIRESERSFFLIILELPQTSASS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgggcagccgcgccacgcccacgcgctccccctcctccgcgcggcccgcggcg
ccgcgtcacgcgcaccaccaccaccactcgcagtcgtcgggcgggagcacgtcccgcgcg
ggcgggggtgggggaggcggaggcgggggaggcgcggccacggagtcggtctccaaggcc
gtggcgcagtacaacctggacgcgcgcctccacgcggtgttcgagcagtcgggcgcctcg
ggccgcagcttcgactactcccagtcgctgcgagcgcattcgctgcccaccccgtcctcc
gagcagcagatcgccgcctacctctcccgcatccagcgcggcggccacatccagcccttc
ggctgcacgctcgccgtcgccgacgactcctccttccgcctcctcgccttctccgagaac
gccgccgacctgctcgacctgtcgccgcaccactccgtcccctcgctcgactccgcggcg
ccgccccctgtctccctgggtgccgacgcgcgcctcctcttctccccctcgtccgcagtc
ctcctggagcgcgccttcgccgcgcgcgagatctcgctgctaaacccgctatggatccac
tccagggtctcttccaagccgttctacgccatcctccaccgcatcgacgtcggcgtcgtc
atcgacctcgagcccgcccgcaccgaggaccccgcgctctccatcgccggtgcagtccag
tcccagaagctcgctgtccgcgccatctcccgcctccaggcgctgcccggcggtgatgtc
aagctgctctgcgacacagtcgtggaacacgtccgcgagctcacgggttacgaccgtgtc
atggtgtacaggttccatgaagacgagcacggggaagttgttgctgagtgccggctcaat
aaccttgagccctacctcgggttgcattatcccgccacagatatcccccaggcatcccgc
ttcctgttccggcagaaccgggtgagaatgattgccgattgtcatgccacgccggtgaga
gtcatacaagatcctgggctgtcacagccactgtgtttggttggctctacactgcgcgcc
ccgcacgggtgtcatgcgcagtacatggcaaacatgggttccatagcatcgcttgttatg
gcggtcatcatcagcagtggtggtgatgatgagcaaacagcacgcggtggcatctcgtcg
gctatgaagttgtgggggttggtagtgtgccaccatacatcaccacggtttatccctttt
ccattgaggtatgcttgtgagtttctcatgcaggcttttgggctgcagctcaatatggag
ttgcagcttgcacatcagctgtcggagaagcacattttgcgaacacagactctgttgtgt
gacatgttactgcgagattcaccaactggcattgtcacacagagccctagcatcatggat
cttgtgaagtgtgatggcgctgcactctattatcatgggaagtactatccattgggtgtc
acccccactgagtcccaaattaaagatatcatcgagtggttgacagtgtgtcatggggac
tcaactgggctcagcacagatagcctggctgatgcaggctaccatggtgctgctgcatta
ggggatgctgtatgtggcatggcagtagcctatattacgccaagtgattacttgttttgg
ttccggtcacacaccgctaaagaaatcaaatggggtggtgcgaagcatcacccagaggat
aaggatgatggtcagaggatgcacccacgatcatcattcaaggcatttcttgaagtagtt
aaaagcagaagcctaccatgggagaatgcagaaatggatgcaatacattccttgcaactc
atattgcgcgactccttcagagatgttgcagagggcactagtaactcaaaagccattgtc
aatggacaagttcagcttggggagctagaattgcggggtataaatgagctcagctccgta
gcaagagagatggttcgcttgattgagacagcaacagtccctatatttgcagtagatact
gatggatgtataaatggttggaatgcaaagattgctgagttgacaggcctttcaattgag
gaggcaatgggaaaatcgctagtaaattatcttatcttcaaggaatctgaggagatagtt
gaaaagctactgtcacgagctttaagaggtgaggaagacaaaaatgtggagataaagttg
aagacatttgggccagagcaatcgaagggaccaatatttgttattgtcaatgcttgttcc
agtagagattacacaaaaaatattgttggtgtctgttttgttggacaagatgtcacagga
gaaaaggtggccatggataaatttgtcaacatacaaggggattataaggctattgtacac
aatccaaatcctctaatacccccaatttttgcatcagatgagaatacttgttgttcagaa
tggaacacagctatggaaaaacttacaggatggtcgagaagtgaagtaattggtaagctg
cttattggagaggtatttggaaacatttgtcaacttaagggcccagatgcattgacaaag
ttcatggttgtccttcacaatgctatagggggacaggattatgaaaagttccccttttca
tttttcgataagaatgggaagtatgtgcagtccttattgaccgccaacacaaggagcaaa
atggatggtaagtccattggggccttttgtttcttgcagattgcaagtgccgaattacag
caagcccttgagattcagaggcaacaagaaaagaagtgttatgcaaggatgaaagagtcg
gcctatatttgccaggagataaagaatcctcttagtggtatccgatttaccaactctctg
ttgcagatgactgatttaaatgatgaccagaggcagttccttgaaactagctctgcttgt
gagaaacagatgtccaagattgtaaaggacgccagtcttcaaagtattgaggatggctct
ttggtgcttgagaaaggtgaattttctcttggaagtgtcatgaatgctgttgtcagccaa
gcaatggtattgttgagagagagggatatacagcttattcgggatatccctgatgaaatc
aaggaagcatctgcatatggtgatcaatatagaattcagcaagttttgtctgacttcttg
ctaagcatggtgcagtttgctccaaccgaaaatggctgggtagaaatacaagttagacta
aatgtaaaacaaaattctgacggaacagattcagcgcttttcatcttcaggtttgcatgt
cctggtgagggcctcccccctgacattgtacaggatatgttcaacaattcttgctggtca
acccatgaaggcattgggctaagcacatgcaggaagatcgtcaaattgatgggcggcgaa
gtccaatacatcagggagtcggagcggagtttcttcctcatcatcctcgagctgccccaa
acctcggccagcagctag
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