Panicum virgatum (switchgrass): 120692636
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Entry
120692636 CDS
T07260
Name
(RefSeq) syndetin-like isoform X1
KO
K23288
syndetin
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120692636
Membrane trafficking [BR:
pvir04131
]
Protein recycling
Others
EARP complex
120692636
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
TetR_C_30
Motif
Other DBs
NCBI-GeneID:
120692636
NCBI-ProteinID:
XP_039831950
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Position
9N:complement(54771735..54784910)
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AA seq
1087 aa
AA seq
DB search
MRRDAPPPHTTPSASSSSPLFGGGGDQLFESGPSPLVFLPLLLIQGGGMDLSRVGEKLLS
SVRSARSLGLIPPIPAAPPPRPDVPERAAAAAAAARAIAGLPPHERINLPSNSEDLVSIY
GSNPQGEPVEELEEVFYEEEFDPIKYILQSIPEEGGDATYFDKQSTLRLAQLDKIAERLS
HHVMGHHEEMVKGMQLVMELEQDLKVANVICMNGRRHITSSKNEVSRDLVVNVKSKKKQA
LLDVLPILTELRHALDMQMELETFVDKENYFQAFQLVPEYLQILENYSGLSAVQEMGRWI
EAWLARTIQKLDTHLLGVCQIFNEESYLIAVDAYALMGDVSGMAEKMQSFCLQEILSRTH
CVLKEMLEEEVGNNTQKNRFTYSDLCVQVPEPKLRPCLLRTLETLFSLMCSYYAIMSFSP
GDKNIESKGPDLADKNDTSQNSDEILVDSGRGHSSAAVIQDGSAAEKSERASSSEISNPD
ASTSGTDSPFYQLRTDATKLVAQTFQRGRRNLWQLATSRLSVLLSSSAVCSTSIYQFLKN
YEDLTIFILAGEAFCGFEASEFRQKLKTVCLNYIVSFHRQNIYALKMVLEKESWTIMSAE
ASQIISLAGLTGDGAALCSPTSRSSKLPINSFHGNSTTANSGKQRLGFASWLKIENPFSI
KLENGSAESPKSNMLFNSSVNNNHGNGNNPSLDEENEDLLADFIDEDSQLPSRIPKTKIV
KANSSHWKDGDISSQTGSSLSLLRMMDKYARLMQKLDIVNIELFKGISQLFGIFYHYIYE
TFGHQDRSQSSKALPDHQSSRLKAALSKISQDSDQWTKPQNVSYSPSSPLSMNSTFGQID
VMPTAPPSSMFTSYGLKERCAAAETVSLVARVLNRSKAHLHSVLSKNNTSSVEEFYRVLV
DSVPDLTEHIHRTSARMLLHIDGYPDKIANAKWEVKELGIEHNGYVDLLLGEFKHYKTRL
DHGGISKELQHLLMEYGIESIAEVLVEGLSRVKRCTDEGRALMSLDLQVLINGLQHIVSA
NVRPKLQTVDTFIKAYYLPETEYVHWARSHPEYSKSQVVGLVNLVATMKGWKRKTRLETV
EKIEAAP
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgcgacgcgccgccgccacacaccaccccctcagcctcctcgtcttcacccctc
ttcggcggcggcggcgaccagctgttcgagtccgggcccagcccgctcgtcttcctgccc
ctgctcctgatccagggcggcggcatggacctctcccgcgtcggcgagaagctcctcagc
tccgtccgctctgctcgctcccttggcctcatccccccgatccccgccgcgccccctcct
cgccccgatgttccagaacgagctgctgctgcggcagctgctgcacgtgcgatcgcgggg
ttgccaccacatgagagaatcaacctgccgtccaattcggaggacttggtctccatctac
gggagcaacccacagggggaacccgtggaggagctcgaggaggtgttttatgaggaggag
tttgatccaataaagtacattctgcaaagcattccagaagaaggaggtgatgccacctat
tttgataagcagtctactttgagattagcacaacttgataagattgcagaacgattatca
catcatgttatgggccaccacgaagaaatggtgaaggggatgcaattagtgatggaacta
gaacaagacttaaaggttgcaaatgttatatgcatgaatggacgaaggcatataacctct
tcaaagaatgaagtgtcaagggatctggttgtcaatgtaaaatcaaagaagaaacaagct
ttgctggatgttcttcctattcttacagagcttcgtcatgcactagacatgcagatggaa
cttgaaacttttgttgataaggaaaattactttcaggcattccaattagtgcctgagtat
ttgcaaattttggagaattattcaggcctttctgctgtacaagaaatgggacgatggatc
gaggcatggttagctcgaacgatccaaaagttggacacccatttacttggtgtttgtcag
attttcaatgaagagagctatctaattgctgttgatgcatacgcactgatgggtgatgtc
agtggcatggctgagaagatgcaaagtttctgcttgcaggaaatactctctcggacacat
tgtgtcctgaaagaaatgttggaagaggaggttggaaataatacccagaaaaataggttt
acgtatagtgatctttgtgttcaagttcctgagcccaaacttcgcccctgcttgttgaga
acccttgagaccttattttcattgatgtgctcatattatgctattatgagcttttcccca
ggagataagaacattgagtccaagggcccagatctagcagacaaaaacgacacatctcag
aatagtgatgaaattttagttgattcaggaaggggtcattcaagtgcagcagtcattcag
gatggttctgcagctgaaaaaagtgagagagcatcatcatccgagatcagcaatcctgat
gctagtacatcaggaacggattctccattctatcagctaaggacagatgctacaaaactt
gttgcacaaacgtttcaaagaggaagaagaaatctttggcagctggcaacaagtcgctta
tctgttttactatctagttcggctgtttgttcaactagtatataccaattcctgaagaac
tatgaagatctcaccattttcattttggctggtgaagcattttgcgggtttgaagctagt
gagttccgccagaagttgaagactgtctgtttgaactacatagtgtcttttcaccggcaa
aatatatatgcgcttaagatggtactggaaaaggaatcttggacgataatgtctgctgaa
gcttcgcagataattagtttagctggcctaactggtgatggtgctgcactgtgctctcct
accagtagaagttccaagttgcctataaattctttccatgggaattcaactacagccaat
tcagggaagcaaaggctcggatttgcttcttggcttaagattgaaaatccattttctatt
aagctagaaaatggctctgccgaatccccaaagtccaatatgcttttcaactcatcagtt
aacaacaatcatggcaatggaaataatccatctctggatgaggagaatgaagaccttcta
gcggatttcattgatgaagatagtcagttgcctagtaggataccgaaaacgaaaattgta
aaagccaattcttcacattggaaagatggagacatttcatcgcagacaggctcgtcactt
tctctactaaggatgatggacaaatacgccaggctgatgcaaaagctggacattgtcaat
attgagctttttaagggtatctctcaactgtttggcatcttttatcattacatatatgag
acatttgggcaccaagacaggagtcaaagcagcaaggctttaccagatcatcaatcatct
cggcttaaagccgctttatcaaaaatttcacaagactctgatcagtggacaaaaccacag
aatgtttcatattcaccttcatcccctttgtcaatgaattcaacttttggtcaaattgat
gtgatgcctactgcgcctcccagttcaatgttcacttcctatggattaaaggagagatgt
gcagccgctgaaacagtatcattggttgctcgagttttgaacagatctaaagcccatcta
cactcagtgttgtctaaaaataacacttcttctgttgaagagttctatagggtgctggtg
gattctgttccagatttgactgagcacattcacagaacgagtgcgcggatgcttttgcat
attgatgggtatccagataagattgcaaacgctaaatgggaggtgaaggagcttggaata
gaacacaatggatatgttgatttgttattgggtgagttcaaacactacaaaacaagattg
gaccatggaggaatttctaaggagctgcaacacctgttgatggagtatggcatagagagc
atagcagaagtcttagtggaaggtctctctagagtgaaacggtgcactgacgaagggcgt
gcattgatgtcacttgacctgcaggtactaattaatgggttgcagcacattgtatcagca
aatgtaaggccgaagctgcaaactgtggacactttcataaaggcctactatttgccagag
actgagtacgttcactgggcacggtctcatccagaatacagcaaaagtcaggtagtcggg
ttggttaacctggtggccaccatgaaagggtggaaacggaagacgagactagaaactgtc
gagaagatcgaggcggctccgtag
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