Panicum virgatum (switchgrass): 120692738
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Entry
120692738 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120692738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120692738
03036 Chromosome and associated proteins [BR:
pvir03036
]
120692738
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120692738
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120692738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
120692738
NCBI-ProteinID:
XP_039832056
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All DBs
Position
9N:complement(77483235..77488493)
Genome browser
AA seq
1012 aa
AA seq
DB search
MAADTVFPVLRSSEYFTRPSINDMVEREVADPGYCSRVPNFVIGRTGYGHVRFLGNTDVR
GIDLNDIVRFDKHSVVVYEDETGKPPVGHGLNKAAEVSLLLNLKDLPEPSFLVEVLKCRA
RTQGARFLSFNPVNGKWKFEVDHFSRFGLVDEEEEDVVMDEAAVRQPIAELRERDPPANG
YEIELSHSLPAHLGLDPAKMQEMRMAMFYNEEDDGYMEDGFPSDERYLSRERMNVDSPTS
SGKGPKLRSVSPLHMSSQKAGRRSGMPSRKEPHALLEYSMNSSELGPSTQGMLMSGQKKG
FPVKMTKVEGFKLPAEQETPVAGKMYANCVVDAALFMGRSFRVGWGPNGMLVHSGSLVNS
PGTGLSSVIHIEKVASDKVVRDDKNKIKEDLAELVFSDPMDLHKSLDHEFLETESDSFRL
KLQKVVANRLVLPDICRSYIDIIERQLEVSDLSMSSRVLLMHQVTVWELIRVLFSEKANV
NQLEPIGDDDQEGMVLDKKEGSVNIDLDALPLVRRADFSNWLQDSVCHRVQGEVGSLSDA
RYLEHILLLLTGRQLDSATEVAASRGDVRLAILLSQAGGSMSNRSDLSHQLDLWKMNGLD
FNYIEEDRLKVYELLAGNIQAAFLDSSIDWKRYLGLIMWYQLQPDTSLDVIICFYDHLLS
KGKVPYPVPVYIDEGPLDEALNWSPGDRFDISFYLMLLHASQDEKFRLLKTMFSAFSSSY
DPLDYHMIWHQRSILEAIGAFNSNDLHLLDLSYVYQLLCLGKCHWAIYVILHMPYLDDAP
YIHEKLIREVLSQYCELWSKDDAERQYIVELGIPEEWMYEALALYHEYYGDQQGALENFI
RCGNWKKAHTIFMTSVAHTMFLSSNHQEIWEITSALENHKSEIADWDLGAGIYIDFYILK
NSMQEESAMDDSHYFIFQDPLSRKNESCKNFFGRLNDSLLVWGSKLPVESRACYSKMADE
LCELFMKAPGVAMNQHMECFQTMLNAPVPDDRKSSYVQEAVSIFTEILCSDS
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgacactgtgttccctgtgctgcgctcctctgagtacttcacaaggccgtca
atcaatgatatggttgagagggaggtggctgatcctggctactgcagcagggttccgaac
ttcgtcatcgggaggactggatatgggcatgttaggttcctgggaaacactgatgtgagg
gggattgacctgaatgatattgtcaggtttgataaacattctgtggtggtttatgaggat
gaaactggtaagcctcctgtagggcatggtcttaataaagcagcggaagtgtcattgctg
ctgaatctaaaggaccttccagagcccagtttccttgttgaagtgctaaagtgtcgtgca
agaacgcaaggtgctaggtttctttcgttcaatccagtgaatggtaaatggaaatttgag
gttgatcattttagtagatttgggcttgtggacgaggaggaagaagatgttgtgatggat
gaggcagctgttcggcagccaattgccgaactaagagaaagagacccacctgcaaatggt
tatgaaattgagctttcgcattcattgcctgctcaccttgggcttgaccctgcaaagatg
caagaaatgagaatggctatgttttacaatgaggaagatgatggatatatggaggatggg
ttcccatctgatgagaggtaccttagcagagaaaggatgaatgtggattcacccacttca
agtggtaaaggtccaaagttaaggtctgtctcacccttgcacatgtcttctcaaaaggct
ggcagaaggtctggtatgccttctcggaaagaaccacacgcactattggagtacagtatg
aattcttcagagcttggtccatcgactcaaggcatgctaatgtctgggcaaaaaaaagga
tttccagtgaaaatgaccaaggttgaaggctttaagctgccagctgagcaagaaactcct
gttgctggaaaaatgtatgctaattgtgtagtggatgctgctttattcatgggtaggtca
tttcgtgttggttggggaccaaatggtatgcttgttcattcaggtagtctggtaaatagt
cctggaactggcctatcttctgttattcacatagagaaagttgcaagcgacaaagttgtg
cgtgatgataagaacaagattaaggaggacctagcagagctagttttttctgatccgatg
gacctccataagagtctcgatcatgaatttctggagacggagtctgactcgttcagatta
aagcttcagaaagttgtggcaaatcgtttagttttgccagacatctgcaggtcatatatt
gacatcattgaaaggcagcttgaagtcagtgatttatctatgtcatcacgggtgctgtta
atgcatcaagttacagtctgggaattaattagggtcttgttctcagaaaaagcaaatgta
aaccagttggagcccattggagatgatgatcaggaaggcatggttttagacaagaaagaa
ggttctgtcaacatagatcttgatgcactccctttggtaaggagagcagactttagcaat
tggttgcaggacagtgtttgccatcgggtgcaaggcgaggtcggttccttaagtgatgcc
aggtacttggaacatattcttcttcttttgactggtcgacaattggactcggccacagaa
gttgctgcctcaaggggtgatgtacggttggcaatcttgctaagtcaggcaggtggatca
atgtcaaatcgatctgacctttctcaccaactggatctatggaaaatgaatggtctagat
tttaattatatagaggaagacaggttaaaagtatatgagttgcttgctggtaacatacag
gctgctttcctagattcatcaattgactggaaaaggtaccttggtttgatcatgtggtat
caattacaacctgatacatcacttgatgttataatttgtttctatgatcatctcctgagt
aagggcaaagttccctatcctgttcctgtatatatagatgaaggaccacttgatgaagca
cttaattggtccccaggcgaccgttttgacatctctttttacctaatgcttcttcatgcc
agtcaagatgagaagtttaggctgctaaaaactatgttcagtgcattctcatcttcatat
gatcccttggactatcatatgatatggcatcagcgttcaattttggaagctattggtgct
ttcaattcaaatgatcttcacttgctggatttgagttatgtttatcagttactttgtctt
gggaagtgccattgggctatctatgtcattctacacatgccatatctcgatgatgcccca
tacatccatgagaagttaatcagggaagttctatcacagtattgtgagttgtggagtaaa
gatgatgctgaaaggcaatacattgtggaactgggtataccagaagaatggatgtatgaa
gctctggctctttatcatgaatactatggagatcagcagggtgcactagagaattttatt
cggtgtggcaattggaagaaagctcatactattttcatgacctctgttgctcatactatg
tttctgtcatcaaaccatcaggagatctgggagatcacaagtgccttggagaatcataag
tctgaaattgctgattgggaccttggtgctgggatatacattgatttctacattctgaag
aactcaatgcaagaagaaagtgcaatggatgattcacattactttatctttcaggatcca
ctttcgaggaaaaacgaatcatgcaaaaatttctttggccgattaaatgattcattacta
gtatggggaagcaaactacctgttgaatcaagggcatgctactcgaagatggcagatgag
ctatgtgagcttttcatgaaggccccaggcgtggcaatgaatcaacacatggaatgtttc
cagacgatgttgaatgctccggtccctgatgaccgcaagtcgtcgtacgtacaggaggca
gtttctatcttcacagaaattctgtgcagtgattcatga
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