KEGG   Panicum virgatum (switchgrass): 120692783
Entry
120692783         CDS       T07260                                 
Name
(RefSeq) transportin MOS14-like
  KO
K15436  transportin-3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
pvir03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120692783
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    120692783
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pvir03016]
    120692783
Transfer RNA biogenesis [BR:pvir03016]
 Eukaryotic type
  tRNA transport factors
   tRNA import factors
    120692783
SSDB
Motif
Pfam: TPR_TNPO3_IPO13_4th Xpo1 TPR_TNPO3_IPO13_2nd TPR_TNPO3_IPO13_3rd IBN_N Importin_rep_3 CRM1_C
Other DBs
NCBI-GeneID: 120692783
NCBI-ProteinID: XP_039832102
LinkDB
Position
9N:complement(23769192..23803022)
AA seq 966 aa
MEAQAQATVKEALAALYHHPDDSIRTAADRWLQEFQHTLDAWQVADSLLHDESSNLETLI
FCSQTLRSKVQRDFEELPAGAFRSLQDSLYVLLKKFNKGPAKVRTQICIAIAALAVHIPV
EDWGAGGIVNWLSDEMKAHPEFIPGFLELLIVLPQETSSYKIAARPERRRQFESDLCTSA
NVAISLLTACMAIDQLKEQVLEGFSSWLRFCRGISASELASHPLVHMALSSLNSDQFLEA
AVNVTSELIHATVSHGSGTTAEQLPLIQILVPHIMGLNEQLKDQSKDEEDVKAIARLYAD
MGESYVDLIAAGSDDSIQIVNALLDVTSHQEFDICSMTFNFWHRLKRNLIRRESYVSYGS
EVAIEAERNRRLLMFRPKFESLVSLVSSRVEYPEDYHTFSEEDRRDFRHVRYAVSDVLLD
ATDVLGGDSTLKVLSTKLAQAYGSCNTQQNPKWQPVEAALFCIQAIAKSVSLEEREILPQ
VMSMLPCLPHNEQLLLTVCSTIGSFSKWIDAAPAESSILPPLVDILNKGMSTSEDTAAAA
SMAFKYICEDCRRKFAGSLDGLFQIYHIAISGVGGYKVSSEDSLHLVEALSVVITTLPPE
SARTALELICQPVINPLQELIHQGDQILQQIPARQLTVHIDRLSSIFSNVKHPEVVAEAV
NRYWPTLKIIFDQRAWDTRTMESVCRSCKFAVRTCGRAMGMTIGAMLEEIQTLYQQHKQS
CFLYLSSEVIKIFGSDPSCADYLTNLIQILFSHTVQLLRTIQDFTARPDIADDCYLLGSR
CIRYCPNLFVPTEMFQRLVDCAMAGITIQHREACKSILSFLSDVFDLPNSSDGGNYREFI
NTIVLQRGATLTRIMIAALTGALPSGRLEEVSYVLLSLSRAFGENMLNWARESINLIPPQ
ALTDAERLRFLNIISDAASGSSLHTITDRFGEISDVCRRNKTVQDLVQSALRPHDLTFTV
VPQQLS
NT seq 2901 nt   +upstreamnt  +downstreamnt
atggaggctcaggctcaggcgacggtgaaggaggcgctcgccgcgctgtaccatcacccc
gacgacagcatccgcaccgccgccgaccgctggctccaggagttccagcacacgctcgat
gcctggcaggtagctgacagtttacttcatgatgaaagcagtaatttagaaactctcatc
ttctgttctcagaccctcagaagcaaggtacaaagggactttgaagagttacctgcggga
gctttccgatcattacaggattctttatatgtgttgctgaaaaagtttaataagggacca
gcaaaagttagaacacagatttgtattgcaattgctgctctggctgtgcatatacctgta
gaggactggggagctggtggaattgtgaattggctaagcgatgagatgaaagctcatcca
gaatttattccaggtttccttgaactgctgatagttttgccgcaggaaacttctagttat
aaaattgcggctcgtcctgaaaggcgcagacagtttgagagtgacctttgtacatctgca
aatgttgctattagtttattaactgcttgcatggctattgatcagctgaaagaacaggtt
ttggagggattttcttcttggcttcgtttctgtcgcggaatatctgcttctgaacttgca
tcacatcctttggtccatatggcactctcttcattgaactctgatcaatttttggaggca
gctgtaaatgttacatctgaattgatacatgctactgtatctcatggctctggtactacc
gctgaacaattgccgctgattcaaattcttgtccctcatattatgggtctgaatgagcag
ctcaaagatcagtctaaggatgaagaagatgtaaaagctattgctcgtttatatgcagac
atgggtgaatcctatgttgacttgattgcagcaggttcagatgactccattcaaattgtg
aacgcactgctagacgttacttctcatcaggagtttgacatttgctctatgacatttaat
ttctggcaccgtcttaagcgtaacctgatcaggagggaatcttatgtatcatatggatct
gaggtggcaattgaagctgagagaaacagaagattgctaatgttccgtcctaaatttgaa
tctctggtgtctctggtcagctcccgagttgaataccctgaggactaccacaccttttca
gaggaggaccgcagggatttcagacatgttagatatgctgttagtgatgtgttacttgat
gcaaccgatgttcttgggggtgactcaacactaaaagtactttccacgaaactagctcag
gcatatggaagctgcaacactcagcagaaccccaagtggcaacctgtagaggctgccctg
ttctgtatacaagcaattgcgaaatcagtctcacttgaagagagagaaattttaccacag
gttatgtcaatgcttccctgccttcctcacaatgagcagttgctgctaacagtttgttcg
accattgggtcattttcaaaatggattgatgctgcaccagctgaatcatccattctccca
cctttagttgatattctcaataagggtatgagtacatcagaggatacagctgcggctgct
tctatggcattcaagtatatatgtgaagactgtaggagaaagtttgccgggtcgttggat
ggcctcttccagatataccatattgcaatcagtggagttggtggttacaaagtttcttca
gaggactcgttgcatttggttgaagccctaagtgtggttattacaacgcttccaccagaa
tctgctagaacagccctggagttaatctgccagccagtaatcaaccccttgcaagaatta
atccaccaaggtgatcaaattcttcaacaaatcccggctcgacagttaaccgtacatata
gaccgcttatcgagcattttcagcaatgtaaaacatccagaagtagttgccgaagctgta
aatagatattggccaacactcaaaattatctttgatcagcgagcatgggatacgcgtacc
atggagtcagtatgtcgatcttgcaaatttgctgtaaggacatgtggaagggccatgggc
atgacgattggtgcaatgcttgaagaaatccaaactctttaccaacaacacaagcagtct
tgcttcctttacctatccagtgaagttatcaagatatttgggtctgatccttcttgcgcg
gattatcttactaacttgatacaaatacttttcagccatacagttcagcttctcagaaca
attcaagattttacagctagaccagatatagctgatgattgctatctgttagggtcaaga
tgtattcgttactgtcccaatctatttgtacctacagaaatgtttcaaagattggttgac
tgtgcaatggctggtataactatacaacacagggaagcatgtaaatcaatattgtctttt
ctatctgatgtctttgaccttccaaactcatctgatggggggaattaccgagaatttatt
aacacaatcgtacttcagcgtggtgcaacccttactagaataatgattgctgccttaaca
ggggcgttgccatctggtcgtttggaagaggtatcttatgttctgctgtcacttagcaga
gcgtttggtgagaacatgctgaattgggcgagggaaagcattaatcttataccaccacaa
gccctaacagatgcagaacgcttgcgtttcttgaacattatatctgacgctgcatccggg
tctagtcttcataccataacagatagatttggggaaatttcagatgtttgtagacgaaat
aaaactgtgcaagacctggttcaaagtgccctgcggcctcatgatttgaccttcactgtg
gttccacaacagctgtcatga

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