Panicum virgatum (switchgrass): 120692793
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Entry
120692793 CDS
T07260
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120692793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120692793
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
120692793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Capsid-VNN
Motif
Other DBs
NCBI-GeneID:
120692793
NCBI-ProteinID:
XP_039832112
LinkDB
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Position
9N:71387950..71391249
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AA seq
534 aa
AA seq
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MGTGVGAPADLVLKEACERCGAASGLYGTSCRHTTLCTGCGRAVARARGRCAVCASPVTR
LIREYDVRVDTSAEKAHFIGRFTTGLPPLSKKRSAGNRWSVRKDVPQGRQLTGNMREKDY
SRRPWILEDETGEHQYQGQIEDPPATYYSLTLKGKEITAVPVGSWYNFSKVAQYKQLTLE
EAEEKMNRRRNSAFGYERWLMKAATNGAAAFSSDVKRLDDVNGGVTNGVHPKKEDMNGNG
NQSVKGEDDEEWEAERRNRLGLSTKGIDEDGEESGKDRDFDLDDEIEKGDDWEHEETFTD
DDETLDIDIEERPDLADPEAPPPEIKQDDNENELGSNDNLSKSGQELKKLLRRAAGENES
DADDKNTDEDEPSSPECAPKQLVVPKTKQVDSNPAKPTPSTHAQGSTPPSKATQKRGSGG
GDANTSNAAASKKIKTEPVTTMSSVKDETPSSLEPISEASLPARTTELSPITEEEVRTAL
RELAPATSQDLVSRFRPRLVTQEDKKAFLNIVRKISHMFKNKGRSYLVLRQEHK
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgggggtcggcgcgcctgccgacctggtcctgaaggaggcgtgcgagcgctgc
ggcgccgcgtcgggactctacggcacgtcgtgccggcacaccaccctctgcaccggctgc
ggcagggccgtggcgcgcgcccgcgggcgctgcgccgtctgcgcctcccccgtcaccagg
ctcatccgggagtacgatgtccgggtggatacctccgcggagaaggcccacttcatcggc
aggttcaccaccggcttgccgcccttgtcgaagaagaggagcgcggggaacaggtggtct
gtccgcaaggatgtcccgcaaggacggcagcttaccgggaacatgcgggagaaggactac
agcaggcggccttggattttagaggatgagacaggtgaacatcagtatcaaggccaaatt
gaagacccaccggctacatactattcactaacgttgaaaggcaaggagatcaccgctgtt
ccagttggttcctggtacaacttcagtaaagttgcacagtataaacagctaaccttggaa
gaagctgaagagaagatgaatagaaggagaaatagtgcatttgggtatgaacggtggctg
atgaaggcagctacaaatggagctgctgcctttagttcggatgtgaagaggcttgacgat
gtaaatggaggggtaacaaatggggttcaccccaagaaagaagatatgaatgggaatgga
aatcaatctgtcaaaggtgaggatgacgaagaatgggaagctgaaaggagaaacaggctt
gggcttagtactaaaggcatcgatgaggacggcgaggaaagcgggaaggacagagacttc
gatttggatgatgaaattgagaaaggtgatgattgggagcacgaagagaccttcactgat
gatgatgagactctggacattgatatagaggaaagacctgatttagcggatcctgaggct
cctcctcctgaaattaagcaggatgacaacgagaatgaattaggcagcaacgacaacttg
agcaagtctggtcaggagctaaaaaagctactccgccgagctgctggggaaaatgagtcc
gacgctgatgacaaaaacacagatgaagacgaaccatcatcgccagaatgtgctccaaaa
caactggttgtacccaaaactaaacaagtggatagcaaccctgctaaaccaacaccctct
acgcacgctcagggctctacacctccatccaaagccactcaaaagaggggatcagggggt
ggtgatgcaaatacttctaatgctgcagcctccaaaaagataaagacagaacctgtaacc
acaatgtcgtctgtcaaggatgaaactccatcttctttggaaccaatttcagaagcatct
cttccagcaagaacgacagaattatcacccatcacagaggaggaagtcaggacagcactt
cgtgaacttgctccagccacatctcaagatctggtgtcgaggttcagacctcgtttagta
actcaagaggacaagaaagcatttcttaacattgtgaggaaaatctctcacatgtttaag
aacaagggccgtagctacctcgttcttcggcaggaacacaagtga
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