KEGG   Panicum virgatum (switchgrass): 120692867
Entry
120692867         CDS       T07260                                 
Name
(RefSeq) HBS1-like protein isoform X1
  KO
K14416  elongation factor 1 alpha-like protein
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    120692867
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120692867
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120692867
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4 Zn_ribbon_RanBP
Other DBs
NCBI-GeneID: 120692867
NCBI-ProteinID: XP_039832197
LinkDB
Position
9N:complement(21094674..21101372)
AA seq 682 aa
MPRKVVSGPDCDDDYDDYDEYDDDYDEYDDTRYGNDQHPVQKEKESLKKSSTMVPVHWTC
SMCTFNNHESMTYCEMCGVFHETFVKSAKNGSLKDAVGAASSEPRASAAPKTDSAKTAMK
TRGVHSDNDSARKHASTPCDKANSTQLPSAGSSLSAGKKKKTPVVSEEIPVERTALLVPN
HFQLKNDRSGGASSSLQNDYVTQKLSSDISQLNVDKNNVNVTKPCLPEEYKPEKWMLADQ
ESGVLSQLNLAIVGHVDSGKSTLSGRLLHLLGRISRKDMHKNEKESKEKGKGSFAFAWAM
DESSEERERGVTMTVGVAYMETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDAST
GSFEAGMDGEGGKSVGQTKEHAQLIRSFGVEQLVVAVNKMDAVAYSKERFEFIKLQLGSF
LRSCNFKDSAITWIPLSAVENQNLIKPPSDACLTSWYQGFCLLDAIDSLQLPSRDVTKPL
ILPICDVIKSQSTGQLAAFGKLETGAIQNGSKVLVLPCGVEATVKNIERDTNSCSVARAG
DNVAVSLQGIDGNQLIPGGVLCHPGFPVAVANRLELKILVLDIAIPILVGSQVEFHIHHV
KEAARVTKIIALLDKTGKPSKSAPRFLNSKQNAVVQVALDGAVCVQEFSKSRALGRAYLR
SSGRTIAVGVVNRVILVPTPGQ
NT seq 2049 nt   +upstreamnt  +downstreamnt
atgcctcgcaaagttgtatctgggcctgactgcgatgatgattacgatgactatgatgag
tatgatgatgattatgatgagtatgatgacaccagatatggcaacgatcaacatcctgtt
cagaaggaaaaagaatcattgaaaaagtcctcaactatggtgcccgtgcattggacctgt
tccatgtgcacgttcaataatcatgaaagcatgacgtactgtgagatgtgtggggttttc
catgaaacctttgtcaaatctgccaagaatggttcattaaaagatgcagtcggcgcagcg
tcaagtgagcctagggcaagtgctgcaccaaaaacagattctgccaagacggcgatgaag
actcgtggtgtgcattctgataatgattctgcgagaaagcatgctagtacaccatgtgat
aaagccaattccacacagttaccatctgctggtagctcattaagtgctggaaaaaagaag
aaaactcctgtagtttctgaagaaatacctgtggaaaggacagctctattggtccccaat
cattttcagctgaagaatgacaggagtggtggggctagcagttccttgcagaatgattat
gtgacccagaaactctcttctgacataagccagctaaatgtagacaagaacaatgtgaat
gttacgaaaccttgtttgcctgaagagtataagcctgagaagtggatgttagctgatcag
gagtcaggggtgttgagccagctaaaccttgcaatagtgggtcatgttgattctggcaag
tcgacactatctgggagattactgcatctattaggaaggatatcgagaaaagatatgcac
aagaatgagaaggagtcgaaagagaaagggaagggatcatttgcttttgcatgggccatg
gatgagagcagtgaagaaagggaacgaggtgtgacaatgacagttggtgtggcctatatg
gagacgaagaaataccgtgtggttttgcttgactcacctggccacaaagattttgtgcca
aatatgatatctggtgcaacacaagctgatgcagctattcttgtggttgatgcttcaacg
ggttcttttgaagccggtatggatggtgaaggaggaaaaagtgtcggtcagactaaagag
catgctcagcttattagaagctttggcgttgaacagcttgttgttgcagtgaacaagatg
gatgctgttgcatactcaaaagaaagatttgagttcatcaaactacaacttggcagtttt
ctgcggtcttgcaacttcaaagactcagctattacctggattcctcttagtgctgtagaa
aatcagaatttgatcaaacctccttcagatgcttgtttgacctcctggtatcaagggttc
tgtctcttggatgctatagattccctgcagcttccttctcgggatgttacaaagcccctc
attcttcccatctgtgatgttatcaagtctcagtcaacagggcagttggcagcttttgga
aaattggaaactggggctattcaaaatggttctaaggtgttagttttaccttgcggggta
gaggcgacagtgaaaaacattgagcgggacactaattcatgcagcgtagcaagagctggt
gacaatgtggcggttagtttacagggtattgatgggaatcaactaatacctggcggggtg
ctttgccaccctggtttccctgtggctgtagctaaccgcttggagcttaagattctagtc
ctggatattgccattccaattcttgttggttctcaggtggagtttcacatacaccatgtc
aaggaggctgcaagagtaacaaaaatcattgctttgcttgacaagactgggaaaccaagt
aaatcagcaccccgatttcttaactcaaaacagaacgctgttgtgcaggttgcccttgat
ggggcggtctgcgttcaggaattctccaagagccgagcacttgggagggcatacttaagg
tcgtctggtcgcacaattgctgttggtgtagttaatcgggtaatactagtcccaactccc
ggccagtga

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