Panicum virgatum (switchgrass): 120692870
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Entry
120692870 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120692870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120692870
03036 Chromosome and associated proteins [BR:
pvir03036
]
120692870
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120692870
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120692870
mRNA degradation factors
5'-3' decay
Decapping complex
120692870
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120692870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
NA-iREase2
Sirohm_synth_M
Motif
Other DBs
NCBI-GeneID:
120692870
NCBI-ProteinID:
XP_039832202
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All DBs
Position
9N:21130342..21134667
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AA seq
503 aa
AA seq
DB search
MHQPRARYPPGYGGGGGGGGGGGGGGNHNYYGRNPQPQPHHHQHYQHQQPPPQQQPQQHA
HRNSSHQHQQWLRRDQGPASAAGSGDAAVRTAAQLDAVDSSSQDWKAQLNIPAPDTRYRT
EDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKT
AAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLRDD
IMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLP
PSRQLLMFSATFPVTVKEFKEKYLPKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTL
FSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL
VCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYR
IEQELGTEIKTIPPQIDLAVYCQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgcaccagcccagagcccgctacccgcccggctacggcggaggcggcggcggaggagga
ggaggcggcggcggcggaaatcacaactactacggccgaaacccgcagccgcagccgcac
caccaccaacactaccagcaccagcagccgccaccgcagcaacaaccgcagcagcacgcg
cataggaactcatcgcatcagcatcagcagtggctgcggcgagatcagggccccgcctcc
gccgcggggtctggagatgctgcggtgaggacggcggcgcagctcgacgctgtagactcg
agttctcaagattggaaggcgcaattgaatataccagctccggatacacgctacaggaca
gaggatgtcactgcaacaaaaggcaatgagttcgaagattattttttgaaacgtgagctg
cttatgggaatctatgaaaagggctttgaaaggccatcccctattcaagaagaaagcatt
ccgattgcactgactggaagtgatattcttgcaagagcgaaaaatgggactgggaagact
gcggcattttgcattccagcacttgaaaaaattgatcccgagaaaaatgccattcaagtt
gttatactggtaccaacaagggaactggctctgcagacttcacaagtctgtaaggagctc
gggaagtacctgaacattcaagttatggtcagcactggtggaaccagcttgagggatgac
atcatgcgtttgtaccaacctgttcatttacttgttgggactcctggccgtatactggat
cttaccaggaagggcatttgtgtgctgaaagattgttcaatgcttgtcatggatgaggct
gacaagctattagctccagagttccagccttctgtagaggcacttattcatttccttcca
cctagtcggcaactgttgatgttttcggcaacctttcctgttactgtcaaggaattcaaa
gagaaatacctgcctaaaccttacgttattaatcttatggatgaactgaccctgaaagga
atcactcaatactatgcttttgtcgaagaaagacagaaagttcattgcctgaatacactt
ttctctaagcttcaaattaatcaatccattatattctgcaactccgttaatagagttgag
ctactagctaagaaaataactgaacttggttattcatgcttctacattcatgctaagatg
ttgcaagaccacagaaaccgagtgtttcatgattttcgcaatggtgcttgcagaaacctt
gtgtgtacagatctgtttaccagaggaattgacatccaggctgttaatgtggtcattaac
tttgacttccccaagacctctgagacatacttgcacagggttggtcgttctggtcgatat
ggacaccttggtttggcagtgaacttgatcacttatgaggatcgtttcaacttgtatagg
attgagcaagaactcggaacagaaattaagacaatacccccacaaattgacctggccgtg
tattgccaatga
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