Panicum virgatum (switchgrass): 120692966
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Entry
120692966 CDS
T07260
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1-like isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120692966
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120692966
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_8
Motif
Other DBs
NCBI-GeneID:
120692966
NCBI-ProteinID:
XP_039832297
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All DBs
Position
9N:complement(61949599..61956307)
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AA seq
485 aa
AA seq
DB search
MSSSGGGGGQQFRYTQTPSKVLHLRNLPWECAEEELVELCKPFGRIVNTKSGVGANRNQA
FVEFTDVNQAISMVSYFASSSEPAQIRGKTVYIQYSNRQEIINNKSPGETAGNVLLVTIE
GVQASDVTIDVIHMVFSAFGYVHKIATFEKAAGFQALIQYTDAATASAAREALDGRSIPS
YLLPQHVTSCCLRISFSAHQDLNIKFQSNRSRDYNNPYLPINYSAMDGTLQPAVGADGKK
VEAQGNVLLASIENMQYAVTVDVLHTVFSAFGAVQKIAIFEKNGGTQALIQYPDATTAAV
AKEALEGHCIYDGGYCKLHLSYSRHTGLNVKAHGDKSRDYTIPPGVIQGVPQPPGAAATS
TGWQGNIQGAGAYAPPGVPAQSHSGNGQVPSWNSGNSGYPPAPGAYPGQMYSSPAPYAAS
GGFPNTPPAAPPHYAASWGLPTHLAAPRHELHTSQQMPLQHGGNQSGPAGAPATSQPPPP
PSYYH
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcgggcggcggcggggggcagcagttccgctatacgcagacgccgtcgaag
gtgctccacctgcggaacctgccgtgggagtgcgcagaggaggagctcgtcgagctctgc
aagcccttcggccgcatcgtcaacaccaaaagcggcgttggcgccaaccgcaaccaggcc
ttcgtcgagttcactgatgttaatcaggcaatctcaatggtttcttactttgcatcatct
tcggaaccagcacaaattcgaggcaaaactgtttacattcagtattcaaataggcaagaa
ataattaacaacaagagccctggagagactgctggaaatgtgttgcttgttaccatagag
ggtgttcaagctagtgatgtcaccattgatgtaatccatatggttttctcagcatttgga
tatgttcacaaaatagccacctttgaaaaggctgcaggttttcaggcattgatccagtat
actgatgcagccactgcttcggctgctagagaagccttagatggaaggagcatcccaagt
tacttgcttccacagcatgtaacatcctgctgcttgcgaatttctttctctgcacatcag
gatttgaacatcaagtttcagtcaaaccgcagcagggattataacaatccatatcttcca
attaactattctgccatggatggtacattacagcctgctgttggtgctgatggaaagaaa
gtggaggctcaaggcaatgttcttcttgcatcaattgagaatatgcaatatgccgttaca
gtagatgttcttcatactgttttctcagcgtttggtgcagtccaaaaaatagctattttt
gagaagaatggtggcacacaagctttgattcagtatcctgatgcaactacagctgcagtt
gcgaaggaagcattggaaggtcattgcatctacgatggtggctactgtaagcttcacctg
tcatactctcgtcatactggtctgaatgtaaaggcacatggtgacaagagcagggattac
acaattccgcctggtgtaatccaaggggtgccacaaccacctggtgcagcagctacatcc
actgggtggcaaggtaatattcaaggagctggggcatatgccccacccggtgtccctgcc
caaagccacagcggcaatggacaagtaccaagttggaattccggcaactcagggtatccc
ccagccccaggagcatatccaggtcagatgtactcatctccagcaccgtatgcagcatcc
gggggcttccctaataccccacccgctgctcctccgcattacgctgcatcatggggcttg
ccgacccatcttgctgctccgcggcatgagttgcacacttcacagcagatgccacttcag
catggaggaaatcagtctggaccggcaggcgcacctgcaaccagtcaaccaccaccacca
ccatcgtactatcattaa
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