Panicum virgatum (switchgrass): 120692968
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Entry
120692968 CDS
T07260
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120692968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120692968
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120692968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
RRM_Nup35
zf-C2H2_3
Motif
Other DBs
NCBI-GeneID:
120692968
NCBI-ProteinID:
XP_039832309
LinkDB
All DBs
Position
2K:62260394..62265961
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AA seq
480 aa
AA seq
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MEVDSGKLFVGGISWETDEDRLREYFGRFGEVTEAVIMRDRNTGRARGFGFVVFADSTVA
ERVIMDKHMIDGRMVEAKKAVPRDDQSITSKNNGSSIGSPGPGRTRKIFVGGLASNVTEV
EFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKR
AVPKEQSPGPIARSPAGGQNYAMSRVHNILNGFNQGYNPNPIGGYGTRVDGRYGLLTGAR
NGFSSFGPGFGMGMNIEGGMSGNFGAGSGFINSSSGRQIGSYYNGSSNRLGSPIGYVGLN
DDSGSILNSMSRNVWSNGNLNYTGNPTNMNAFAPPGSGGGIPGDGISWGGLTSAHGMGNI
SGLGSGNLGRGTGDNNFGLPSGNYVRSNSTGTIGEPFSASANAYESNNQGAYGSSSIYGD
TTWRFTSSEVDMPPFGHDLGNVDPDIKSEISAGYMGNYTVNNNQTSRGQLLFQHCAMIYT
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcgactccgggaagctcttcgtcggcggcatctcctgggagacggacgaggac
cgcctccgcgagtacttcggccgcttcggggaggtcaccgaggccgtcatcatgcgggac
cgcaacaccggccgcgcccgcggcttcggattcgtggtcttcgccgactccacggtcgcc
gaacgcgttatcatggacaaacatatgatcgacggccggatggtggaagccaagaaggct
gttcccagggacgaccagagtatcacaagcaagaacaatggcagcagcatagggtcacct
ggaccaggacgtactagaaagatctttgtgggaggcctagcttcaaatgttactgaggtt
gaattcagaaggtactttgagcaattcggtgtgataaccgacgtggttgtgatgtacgac
cacaacacgcagaggcctaggggatttggtttcatcacctatgactcagaagacgcagtg
gataaggctctgcacaagaacttccatgagctgaatggtaaaatggttgaggtcaagagg
gctgtcccaaaggagcagtctcctggaccaattgcacgttcacctgcaggagggcagaac
tatgctatgagcagagttcataacatcctgaatggattcaaccagggttacaacccgaac
cctattggtggttatggcacgagggtcgatggaaggtacggtctccttacaggtgcacgg
aatgggttctcttcgtttggtccaggttttggaatgggcatgaacattgaaggtggaatg
agtggaaattttggtgcaggctctggtttcatcaatagctccagtgggaggcaaataggt
tcttactacaatggtagttcaaacagattaggtagtcctattgggtatgttggccttaat
gacgattcaggatcaatactgaattcaatgtcaagaaatgtctggagtaatggaaatctg
aactacacgggcaaccctacaaacatgaatgcttttgctccacctggaagcggtgggggt
attcctggcgatggtattagttggggaggccttacttctgctcatgggatgggcaacatt
tcaggccttgggtcgggaaaccttggccgtggaactggagataacaactttggcttgcct
tccggcaactatgtgaggagcaattcaactggtaccattggcgagccattttctgcatca
gccaatgcatatgaatcgaacaatcaaggtgcctatggcagcagctctatttatggtgac
acaacctggaggttcacctcatctgaggtagacatgcctccttttggtcatgatcttgga
aatgtcgatccggatatcaaatcagaaatatcagcaggttatatgggcaactatactgtt
aataataatcagacaagcagaggtcagttgctatttcaacattgtgctatgatctacaca
tag
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