Panicum virgatum (switchgrass): 120693053
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Entry
120693053 CDS
T07260
Name
(RefSeq) homeobox-leucine zipper protein HOX10 isoform X1
KO
K09338
homeobox-leucine zipper protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120693053
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
120693053
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MEKHLA
START
Homeodomain
ZPR
Homeobox_KN
bZIP_1
CCPG1_N
HALZ
PAS_8
KxDL
Motif
Other DBs
NCBI-GeneID:
120693053
NCBI-ProteinID:
XP_039832382
LinkDB
All DBs
Position
9N:complement(82452486..82459035)
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AA seq
871 aa
AA seq
DB search
MAAVVAMPGGSSDSGGFDKIPGMDSGKYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRE
CPILANIEPKQIKVWFQNRRCRDKQRKESSRLQAVNRKLTAMNKLLMEENERLQKQVSQL
VHENAHMRQQLQNTSLANDTSCESNVTTPPNPIRDATNPSGLLSIAEETFTEFLSKATGT
AIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRPSWFRDCRS
LEVFTMFPAGNGGTIELVYMQMYAPTTLVPARDFWTLRYTTTTEDGSLMVCVNLNCTSIF
FSLIMNEPGHIFANLPPISKVCERSLSGSGGGPNAASAHQFVRAEMLPSGYLVRPCEGGG
SIVHIVDHLDLEARSVPEVLRPLYESSRVVAQKMTTVALRHLRQIAQETSGEVVYALGRQ
PAVLRTFSQRLSRGFNDAISGFNDDGWSIMGGDGIEDVIVACNSTKKIRNSSSVGITFGA
PGGIICAKASMLLQSVPPAVLVRFLREHRSEWADYNIDAYLASSLKASACSLPGLRPMRF
SGGQMIMPLAHTVENEEILEVVRLEGQSLTHDEALLSRDIHLLQLCTGIDEKSVGSSFQL
VFAPIDEHFPDDAPLISSGFRVIPLDMKTDGVSSGRTLDLASSLDVGSAAPQASGDASPD
DCNLRSVLTIAFQFPYEMHLQDSVATMARQYVRSVVSAVQRVSMAISPSQSGLNAGQRML
SGFPEAGTLARWVCQSYHYHLGVELLNQSDEAGEALLKMLWHHPDAILCCSFKEKPMFTF
ANKAGLDMLETSLVALQDLTLDKIFDESGRKALFSDISKLMEQGYVYLPSGVCMSGMGRH
VSFDQAVAWKVLGEDSNVHCLAFCFMNWSFV
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggtggtggccatgccagggggaagcagcgacagcggtggatttgataaaatt
cccgggatggactcggggaaatacgtgcgttacaccccggagcaagtcgaggtgctcgag
cggctctacatcgattgccccaagccaagctcctcacggcggcagcagctgctgcgggag
tgccccatacttgccaacattgagccaaagcagatcaaggtttggtttcagaaccgaagg
tgccgcgataagcagcgcaaggaatcctctcggcttcaggctgtcaacagaaagttgacg
gcaatgaacaagctccttatggaagagaatgagcgtcttcagaagcaggtctctcagctg
gttcatgaaaatgcgcacatgcggcagcagctgcagaatacatcactggccaatgataca
agctgcgaatcaaatgtgactacccctccaaaccctataagggatgcaactaacccttct
ggactcctttcgatcgctgaggagaccttcacagagttcctctcaaaggctactgggaca
gctattgattgggtccagatgcctgggatgaagcctggtccggattcggttggtattgtg
gccatttcgcatggttgccgtggtgttgctgcccgtgcctgtggtttggtgaatctagaa
ccaacaaaagtcatagagatcttgaaagatcgtccatcttggttccgtgattgtcgaagc
cttgaagtgtttacaatgtttccagctggaaatggaggaacaattgaacttgtctacatg
cagatgtatgccccaacaactttagtccctgcacgtgatttttggacgttacgatacaca
acaacaacggaagatggcagccttatggtatgtgtgaatctgaactgcacttctattttt
ttttcattgataatgaatgagccaggacacatatttgctaatcttcctcccatctctaag
gtctgtgagagatccttgagtggttctgggggtggtccaaatgcagcctctgcacatcaa
tttgtaagagctgagatgcttccaagtgggtatttagttcgcccatgtgaaggtgggggt
tccatcgtgcatatagtggaccatctagatcttgaggctcggagtgtacctgaagtgctt
cgaccactttatgagtcttctagagtagttgctcagaaaatgactaccgtggcactgcgg
caccttagacaaattgctcaagaaacaagtggggaagtagtttacgccttgggcaggcaa
cctgcagtcctacggacctttagtcaaaggctgagcaggggctttaatgatgccattagt
ggtttcaatgatgatggctggtctataatggggggagatggaattgaagacgtcatagtt
gcttgcaactcaactaagaaaattaggaatagcagcagcgtggggattacatttggagcc
cctggaggcattatttgtgctaaggcgtccatgttactgcagagtgttccaccagcagta
ctggttcggtttttgagggagcatagatctgaatgggcggattataacattgatgcctat
ttggcttcatcactaaaggctagtgcgtgctcacttcccgggttgcgacccatgagattt
tctgggggccagatgatcatgccgctagctcacacagtggagaacgaggagattcttgaa
gttgtccgccttgaagggcaatctcttactcatgatgaagctcttctttcaagggacatc
caccttctccagctttgcactggaattgatgagaaatctgtgggttcctccttccagctt
gtgtttgcaccaattgatgaacattttccggacgacgcacccttgatttcttctggcttt
cgtgttataccccttgatatgaaaacagatggtgtatcctctggtaggacactagatttg
gcatctagtcttgatgtgggctctgctgcaccccaagcctcaggggatgcatctccagat
gactgcaatttgagatctgtgctgacaattgcctttcaattcccttacgagatgcacctt
caagacagcgttgcaactatggcccgtcaatatgtccgtagtgttgtttctgctgtgcaa
agagtttccatggctatatctccctcccagtctggtctaaacgctgggcagaggatgctt
tctggcttccctgaagcaggcacattggctagatgggtttgccagagctatcattaccat
cttggtgtggaattacttaatcaatcagatgaagctggtgaggcattgttgaaaatgctc
tggcatcatccagatgctattctgtgctgctcatttaaggagaaacctatgtttacgttt
gccaacaaggcagggcttgacatgttagagacatcccttgttgccctacaagatctgact
ctagacaaaatcttcgacgagtctggaagaaaagcattgttctcagatatctcaaaattg
atggaacagggctatgtgtacctgccgtcgggagtgtgcatgtcaggaatgggtcgccat
gtttcattcgatcaagctgtagcatggaaggtgctaggtgaggacagcaacgtccactgc
ctggctttctgctttatgaactggtcctttgtgtga
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