Panicum virgatum (switchgrass): 120693206
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Entry
120693206 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP133-like isoform X1
KO
K14300
nuclear pore complex protein Nup133
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120693206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120693206
03036 Chromosome and associated proteins [BR:
pvir03036
]
120693206
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120693206
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120693206
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
120693206
NCBI-ProteinID:
XP_039832556
LinkDB
All DBs
Position
9N:complement(73474827..73483747)
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AA seq
1295 aa
AA seq
DB search
MFSPAIRKPHLLHRKDREEASPSPPPAAPAHSPSPRGFAISDRPATGTPVPWTSSSLLAR
ISTSKRTDRAGESEQIQPVHVAEFPQIVRNAQASLLQKNFSGKNMFAGGIDKETSLAWMI
CGNELFIWNYSASSAKDCLVLDVPSSLIGYKDVKSLPGIQWTVCIMRWHSSGASTRNSGD
ILYRKSSTGVILYNKRTQAVAYWPDIYAEFNKSLVLSSPGGGEVSASDGASDCFRFNSII
AATVPGGTHECIAIASEPTGALWLFQCSPEGIRRKKVHGDTFVDGGADHSQKSNGGRSLA
WLPNYVSSEGSDRKFFLLTNNEVQCWSISLLHDIDIKKLGSQEIVGTDGDVSIKKDIAGQ
KNVWLLDMQIDEHGKEFSILVATFCKDRVSGSNYTQYSLLTMLYKPNQKFSYEDNAVKVE
RFLEKKAPSQVIIPKARVEDEEFLFSMRLKTGGKPSGSVIILSGDGTATVAIYWRGSTRL
YQFDLPWDAGKVLDASVIPSADDRDEGAWVVITEKAGVWAIPEKAVLVGGIEPPERSLSR
KGSCNEAVAEEKRRTQVFSAGVVPRRVSSEAWSAGERQRPALTGIAQQAVVDEESEMLLN
RLFHDFIISGAVYEALQKLRAAGAFDKEGEMNIFVRMSKSIVNTLAKHWTTTREAEFLAS
TIVSSLVEKQQKHEKFLQFLVLSKCHEELASKQRAAMLTIMEHGEKLSGMIQLRELHNTL
IQQRSSTHLSPQLKTQTTGALWNLIQLVGEKARRNTVLLMDRDNAEVFYSRISEIEDLFY
CLSHQLQYIISREEHPSVQMQRALELGNACITLVHAALHYRKEHKEWYSSPEGLITWNSH
PVVRSGIWSLAAFVMELLGESVAADMSMKFNLWSQLEGLTDVLLEAYIGLFTAKFERGDE
HGVLVQEYCERRDELLGSLYNVAKQIVEAKYQQESRDGTDNLDLKESIFREVISPILATA
KRHEGYQTLWQICSDLNDSVLLRSLMHDSVGPHGGFSFFVFKELVIRRHYSKLLRLGEEF
QEELASFLKDRSDLLWLQEICLNQFSSASETLHTYALHGSPDEDASVTTSRKPLSFAERR
HLLYLSKIAATAGNDIDYEAKVARIEADLRILKLQEEIVQHDPEYAQAKYTSTLIDPSKL
IEMCLKRDQELSLKAFEVFASTNSSFRTSNRCLLEACWINATNQDDWVKLSEASMSEGWS
DEVIQESLQGTVLFKASRLCYSPDSVVLYDGTFEDVLPVKKEDVHLRGLESKCLSVEGVL
MQHKDFPDAGKLMMTAVIMGKELSYTAAEPVEMDS
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgttctctccggcgatcaggaagccccacctcctccaccgcaaggacagggaggaggca
tccccttcacctccacctgctgctcccgcccactccccgtcgcctcgcggattcgccatc
tccgaccgccccgctaccggcaccccggtcccttggacctcctcctctctcctcgctagg
atttcgacatcgaagcgaactgacagggctggtgaatcggagcagatccaaccggtgcac
gtagcagagtttccccaaatcgttcggaatgcccaagccagccttctacagaaaaatttc
tctggcaagaacatgtttgcgggtggcattgataaagaaacatcccttgcgtggatgata
tgcggaaatgagctttttatctggaactactcagcttcttctgctaaagactgtctagta
cttgatgttccatcttctcttattggatacaaagatgtgaaatccctccccggtattcag
tggacagtttgtataatgagatggcatagtagcggtgcatcaacaagaaacagtggagat
atattgtatagaaaaagttctactggtgttatcctctacaacaaaagaacacaagcagtt
gcttattggcctgacatctatgctgagtttaataagagtctagttcttagctcaccaggt
ggtggtgaggtgtctgcaagtgatggtgcatctgattgtttcaggtttaattcaattatt
gcagccacagttccaggaggcactcacgaatgtattgcaatagcttctgagcctaccggt
gctttgtggttgttccagtgttcaccagaaggaattcgtcgaaagaaagtccatggagat
acatttgttgatggtggtgccgatcattctcagaaaagtaatggtggaaggtcattggct
tggctgccaaattatgtctcatctgagggttctgatcggaagttctttttgttgacaaac
aatgaggtgcaatgttggagtatctcgctcttgcatgacattgatataaaaaaattaggg
tctcaggaaattgttggtaccgatggggatgtgagcataaagaaagatatagctgggcag
aaaaatgtctggcttttggacatgcagatagatgagcatgggaaggaatttagcattctt
gttgctacattttgcaaagatagggttagtgggtcaaactacactcagtattcacttctg
acaatgctgtacaaacctaaccagaagttttcatatgaagataatgctgttaaagttgaa
agatttttggagaaaaaagctccttctcaggtgattattcctaaggctagagtagaggat
gaagaattcttgttctcaatgaggctaaaaactggtggtaagccttctggttctgtaatc
atcctgtcaggtgatggaacagcaacagtggccatatattggagaggttccacccgactt
tatcagtttgatctgccctgggatgctggaaaggtcctagatgcttccgttatcccatca
gctgatgacagggatgaaggtgcttgggttgttataacagaaaaggcaggagtctgggcg
attcctgaaaaagctgtattagttggtgggatcgaaccaccagaacgcagcttgtcacga
aaaggtagttgtaatgaagcagttgctgaggagaaaagaagaactcaagtcttcagtgcc
ggtgttgttcccaggagagttagttctgaggcttggagtgctggtgagaggcaaaggccc
gctttaactggcatagctcagcaggctgtggttgatgaagagtctgaaatgctactgaat
cggttatttcatgatttcataatctctggtgcagtttatgaggcacttcaaaagcttaga
gctgcaggagcatttgacaaagagggtgagatgaacatatttgttcggatgagcaaatcc
attgtaaacacactagctaaacactggacaacaaccagagaagctgaatttcttgcctca
acaattgtttcatcccttgttgagaagcagcaaaaacatgaaaaattcctccagtttctt
gtcttgtcaaagtgtcatgaagaactcgcttcaaagcaaagagctgcaatgctaaccatc
atggagcatggtgaaaagctttctggaatgatacagcttagggaattacataatactctt
atccagcaacgctcaagtactcatttatcacctcagttaaaaacccaaaccactggtgct
ctttggaaccttattcagttggttggtgagaaagctcgaaggaacacagttctcttaatg
gaccgcgataatgcagaagtcttctacagtagaatttctgagatagaggatctattttat
tgcttatctcatcagcttcaatacatcattagtagagaggaacacccttctgttcagatg
caacgggcacttgaattaggaaatgcttgtatcaccttagttcatgcagcattgcactac
aggaaggagcacaaggagtggtattcttctcctgaaggactgataacatggaacagccac
cctgtcgtacggtctggaatctggagtttggcagcatttgttatggagcttttgggagaa
tcagtagctgcagacatgtcaatgaaatttaatctatggtctcagctggagggactcaca
gatgttctactggaggcatacataggtctttttactgccaagtttgaacgtggggatgaa
catggcgtgctagtccaagaatattgtgaacgaagagatgaacttctcggatccctctac
aatgttgctaaacaaatagtggaggccaaataccagcaggagtcaagagatggtacagac
aatctggatctgaaagaatctatatttagagaggttatttctccaattttggcaacagcc
aaacggcatgaaggttaccaaacactgtggcagatctgctctgacctcaatgattcagtt
ctcctccgtagcctaatgcatgatagtgtaggacctcatgggggattcagtttctttgtt
tttaaagagctagtcatcagaagacattactctaagctgttaaggctgggtgaagaattc
caggaagagctagctagttttctgaaagaccgcagtgatcttctgtggcttcaggagata
tgcttaaaccagttctcatctgcttctgagactcttcatacctatgcgctgcatggtagt
cctgatgaagatgctagtgtcacaaccagcagaaagccactgtcgtttgctgaaagaaga
catcttctttatctctctaaaattgctgcaacagcaggtaatgatattgactatgaagcg
aaggttgcacggatagaagcagacttgcggattctaaaacttcaggaagaaattgttcag
catgatccagaatatgctcaagccaaatatacaagcacgttgattgatccatcaaaactg
attgagatgtgcctgaagagagaccaagaactctcccttaaagcttttgaagtatttgct
tcgacaaactcatcattccgaacctccaacagatgccttcttgaggcatgctggataaat
gcaaccaaccaggatgattgggtgaagctttcggaggcatccatgtcggaaggttggagc
gacgaagttatacaagaatctcttcaaggaactgtcctcttcaaagcttccaggctgtgt
tatagcccggattctgtggtgttatatgatggcacttttgaagatgtgctgcctgtgaag
aaagaggatgtacatctgaggggtttggagagcaaatgcttgtcagtggagggagtactg
atgcaacacaaggattttcctgatgctggtaaattgatgatgactgcagtgattatgggc
aaggaactatcatatacagctgcagaacctgtggagatggactcatga
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