Panicum virgatum (switchgrass): 120693329
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Entry
120693329 CDS
T07260
Name
(RefSeq) leucine--tRNA ligase, cytoplasmic-like isoform X1
KO
K01869
leucyl-tRNA synthetase [EC:
6.1.1.4
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120693329
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120693329
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120693329
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120693329
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.4 leucine---tRNA ligase
120693329
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class I (U)
120693329
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
120693329
Prokaryotic type
120693329
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
120693329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
tRNA-synt_1g
Anticodon_1
tRNA-synt_1e
RBD_LARS1
tRNA-synt_1f
Motif
Other DBs
NCBI-GeneID:
120693329
NCBI-ProteinID:
XP_039832679
LinkDB
All DBs
Position
9N:10621966..10629114
Genome browser
AA seq
1094 aa
AA seq
DB search
MKMSSNPDGGKSFARRDFLITIQSEAQKLWDENRVFEAEPGNSRPGPGEKFFGNFPYPYM
NGLLHLGHAFSLSKLEFGAAYHRLRGSNVLLPFAFHCTGMPIKASADKLAREIQQYGNPP
VFPAVEDEVSSEVADSQADQAVAPDKFKSKKSKAAAKTGVQKFQWEIMRGFGLSDKEIAK
FQDPYHWLTYFPPLAKEDLKAFGLGCDWRRSFITTDMNPFYDAFVRWQMRKLKKMGKVVK
DMRYTIYSPLDGQPCADHDRATGEGVLPQEYVLIKMEVIPPFPPQLKALEGKKVYLAAAT
LRPETMYGQTNCWVLPDGKYGAFEINDTDVFILTARSALNLAYQNLSRIPQKPTCLAEIS
GNDLIGLPLKSPLAFNEIIYALPMMTILTDKGTGIVTSVPSDSPDDFMALQDLVTKPALR
GKFAVKDEWVLPFKVVPIINIPEFGDKSAEKVCLDLKIKSQNDKEKLAEAKRMTYLKGFT
DGTMIVGEFKGRKVQDVKPLIKNKLLEEGTAVLYSEPEKKVMSRSGDECVVALTDQWYIT
YGEAEWKQMAEKCLENMNTFSAEARNGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLVES
LSDSTLYMAYYTIAHLLQNGNMYGKEISAIRPEQMTDDVWEYVFCNGPAPKSDIPPTLLR
KMKQEFEYWYPFDIRVSGKDLIQNHLTFCIYNHTAILPEHHWPRGFRCNGHLMLNSEKMS
KSTGNFRTLKQAIEEFSPDATRFALADAGDGMDDANFVFETANAAIMRLTKEIAWMEEVV
AAESSLRAGPPSSYADRVFANEINIAVKETEKSYNAFMFRDALKSGFYDLQLARDEYRLS
CGAAGMNRDLLWQFMDVQTRLITPICPHYAEHVWQKILRKEGFAIKAGWPVADTPDPTLR
IANKYLQDSIVLMRKLLQKQESGSKKPKKGAQPAPPTENKMSIGLIYVNEHFYGWKEQCL
KVLQSKFDSQAHSFAPDQEIIEALKNCSIGQEANFKQVQKLCMPFIRFKKDEAKEVGPQA
LELKLPFGETDVLQENLELIRRQLGLEHVEVLSASDEAARSKAGKYASLLNQNPPSPGEP
VAIFMSKQEFEAQN
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgtcgtctaatcctgatggaggcaagagctttgctcgcagagacttcttgatc
acaattcaatcagaggctcaaaagctctgggatgagaaccgggtttttgaggctgaacca
ggcaatagtcgtccgggacctggtgaaaaattctttggcaactttccgtatccttacatg
aacggattgttacatttgggccatgccttctcactgtccaagcttgagttcggtgctgcg
taccacagactgcggggttccaacgtccttttgccgtttgctttccattgtactggaatg
cctatcaaggcctcagcagataagcttgcaagggagattcagcaatatggtaatcctcca
gtgtttcctgctgtagaggatgaagtcagctcggaagtagcagatagccaggctgaccag
gctgttgccccagataaatttaagagcaagaaatctaaggctgctgcaaagactggtgtg
cagaagttccaatgggagatcatgaggggctttggcctgtcagataaagaaattgctaaa
ttccaggatccatatcactggttgacatacttccctccattggcgaaggaggaccttaag
gcttttggcctgggatgtgattggaggcggtcattcataacgactgatatgaacccgttc
tatgatgcttttgtccggtggcagatgagaaagctgaagaaaatgggcaaggttgttaaa
gatatgaggtatacaatctactctccattggatggccaaccttgtgctgatcatgatcga
gcaacaggtgaaggtgtgctgccacaggaatatgtgttgatcaaaatggaggtgatccca
cctttccctccccagttgaaggccttagaggggaagaaagtttacttagctgcagctaca
ctgagacctgagactatgtatgggcagacaaattgttgggtactacctgatggaaagtat
ggggcctttgagatcaatgatactgatgtcttcattctgactgcaaggtctgcacttaat
ctcgcatatcaaaatctatcaaggatcccacagaagccaacatgcttggctgaaatatct
ggaaatgatctgattggtttgccactgaagtctcctcttgccttcaatgaaatcatatat
gcgctacctatgatgaccatcctaacagataaagggactggtattgtgaccagtgttcca
agtgattcgccagatgatttcatggcgctgcaagatttagtcacaaaaccagctctgaga
gggaagtttgctgtgaaagatgagtgggttcttccattcaaagttgttccaataatcaat
atccctgaatttggagacaagtcagctgagaaggtgtgcttagatcttaagattaagagc
cagaatgacaaggagaagcttgccgaagcaaagcggatgacatatttgaaaggattcact
gatggaactatgattgtaggagagttcaagggcagaaaagttcaagatgtgaaaccattg
ataaagaacaagctcctggaagaaggcactgcagtgttgtacagcgagcctgagaagaag
gtaatgtcaagatctggtgacgagtgtgttgttgctctcacagaccagtggtatataaca
tatggtgaggctgaatggaagcagatggcagagaaatgtttagaaaatatgaatacattc
tcagctgaggctcgcaatggttttgagcacactttgggctggctgaaccagtgggcctgt
tcacgttcttttggtctagggactcgtattccatgggatgagcagttccttgtggaatct
ctttcagattcgaccctatatatggcctattacaccatcgcacatcttctgcaaaatggc
aatatgtatggcaaagagatatctgctatcaggccagaacaaatgacagatgatgtctgg
gagtatgtgttctgcaatggtccagcaccaaaaagtgacatccctcctacccttttgaga
aaaatgaagcaggaatttgagtactggtatccctttgatatccgggtttctggtaaggat
cttatccagaaccacctgacgttctgcatttacaaccatacagcaattctaccggaacac
cattggccccgtggcttccgttgcaatgggcatcttatgctcaactctgagaagatgtcc
aagtcgacagggaatttccgtactctcaagcaggccattgaagaattctcaccggatgcc
actaggtttgcgcttgctgatgctggtgatggtatggatgatgcaaactttgtctttgaa
accgcaaatgctgctatcatgaggcttacaaaggaaattgcatggatggaagaggtggta
gctgctgaatcttctctgcgagctgggcctccatctagttatgctgaccgcgtttttgcc
aacgagataaacattgcagtcaaggaaactgagaagagctacaatgccttcatgttccga
gatgcactgaagtctggattctatgacctgcagctggctagagatgaatacagactctcc
tgtggagcggcaggcatgaaccgtgatttactttggcaatttatggatgtccagacgagg
cttatcacccccatctgtccacattacgcagagcatgtgtggcaaaagatcctgaggaaa
gaaggctttgcaattaaagctgggtggccagtggcagacaccccagaccctactctaaga
attgcaaacaagtacctgcaagattctatagttttaatgaggaagctgcttcagaagcaa
gaatctggttccaagaaacccaagaagggagctcaacctgctcctccgacagagaacaag
atgagcattggtcttatatatgtgaacgagcacttctatggctggaaagagcaatgcttg
aaggtgctccagtctaaattcgacagtcaagcacattcctttgcaccagaccaggagatt
atagaagctctgaagaactgttccattggtcaggaagcaaacttcaaacaagttcagaag
ctgtgcatgcctttcatcaggttcaagaaagacgaggctaaggaggttggacctcaggct
ttggagttgaagcttccttttggtgaaacagatgttctacaggagaacctggagctgatc
agaaggcaattgggccttgagcatgtagaggtgttgtcagcatctgatgaagctgcccgt
tctaaagctggcaagtatgcgtctctactaaaccagaacccgccgtctcctggcgagcca
gttgcaatcttcatgagcaagcaggaatttgaagcccaaaattaa
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