Panicum virgatum (switchgrass): 120693440
Help
Entry
120693440 CDS
T07260
Name
(RefSeq) alpha-humulene synthase-like
KO
K15803
(-)-germacrene D synthase [EC:
4.2.3.75
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00909
Sesquiterpenoid and triterpenoid biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
120693440
Enzymes [BR:
pvir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.3 Acting on phosphates
4.2.3.75 (-)-germacrene D synthase
120693440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Terpene_synth_C
Terpene_synth
Terpene_syn_C_2
iSTAND
Motif
Other DBs
NCBI-GeneID:
120693440
NCBI-ProteinID:
XP_039832802
LinkDB
All DBs
Position
9N:complement(58368751..58374090)
Genome browser
AA seq
504 aa
AA seq
DB search
MARGRGGQDEEIRAMITTAIDTVEIMKLIDTLEHLCLDYHFEAEINDKVQFLNGTKFDSD
DLHQVGLRFRLLRQRGFYVPPDVFNKFKDEFGNFKTTLIGDTKGLLSLYNAAHLLLPNET
VLEDAIKFAGDNLKKAVHDLKSPLAEQVSRALKSPLPRFMQKLEARFYIDEYGDEEDSND
TILKFAKLDFIAVQREHCKELKALSLWWKDLRITETLPYARDRIVECYFWILGVYFEPCY
SRARIITTKYIILLSVLDDTYDIYATLDECRLLTIAFKRWDKDAVDMLPEYIKSFYLKFI
NSCNEIESELEPSEKFRVSHFKSQTEIMVDAYLQEASWYAQDMFPEVDIRKELSVVKSSG
YPELSCASFIGMGEVATKEAFDWVTSIPKIVRASAEICRFTDDIYSIEREHRVGQCASTF
DCYMKQYNATSEETKERFLSWIEDAWRTINEECIVETVPRPLIERVANWAKIMHVIYTHC
DNGYNMCENLKDYIAVLLEEPLPF
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtggaaggggcggccaagatgaagagatccgagccatgatcaccaccgcaatt
gacacggtcgagataatgaagctgatcgacacgcttgagcacctctgcctcgactaccat
tttgaagcggagatcaatgacaaggtgcagttcctcaacggaacaaagttcgacagcgac
gatcttcaccaggtgggtctccggttcaggctgctcaggcagcgtggcttctatgtcccc
ccagatgttttcaacaagttcaaggacgagttcggaaacttcaagacaacattaattgga
gacacaaagggactgctaagtttatacaatgcggctcatctcttactcccgaatgaaacc
gtacttgaagacgctatcaagtttgccggagacaatctcaagaaagcagttcacgacttg
aaatctcctctggccgaacaggtttcgcgtgctctcaagagcccccttcctaggttcatg
cagaaacttgaagcaaggttctacattgacgaatatggagacgaagaggactcaaatgat
acaatactgaaattcgcaaagttggacttcattgctgttcaaagagagcattgcaaagaa
ttgaaggccctctcgttgtggtggaaggacttgagaattacagagactttgccctatgct
cgggaccgcatagttgaatgttacttctggattttaggagtgtattttgaaccatgttac
tctcgtgcacgcataatcactacaaagtacattatccttcttagtgttttggacgatacc
tacgatatttatgccaccttggatgagtgtcgtctccttactattgcttttaagaggtgg
gacaaggatgctgtggatatgttgcctgagtacataaagagtttctatctgaaatttata
aacagttgtaatgaaattgagagtgaattggaacccagtgagaaattccgcgtgtcacac
tttaagagtcagaccgagataatggtggatgcttatctacaagaggcatcgtggtatgca
caggacatgtttccagaagtcgacatccgtaaagagctctcggtagttaaatcctctgga
tatcctgaactctcctgcgcctcgtttatcggaatgggagaggttgccacaaaagaggca
ttcgattgggttacaagcatcccaaaaattgtgagggcttctgctgaaatttgcagattc
actgatgatatctattctattgagcgagagcatagggttgggcagtgtgcaagcacattt
gactgctacatgaaacaatacaacgcaacgagtgaagaaacaaaagaaagattcctttct
tggattgaagatgcatggaggacgatcaacgaagaatgcatcgtggagacggtgccaagg
ccactcatagaacgagtagctaactgggccaaaattatgcacgttatctacacgcactgt
gataatggctacaacatgtgcgagaatctgaaagattacattgcagtacttttggaagaa
ccgctccccttctaa
DBGET
integrated database retrieval system
